View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1134_low_22 (Length: 325)
Name: NF1134_low_22
Description: NF1134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1134_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 8381853 - 8381612
Alignment:
| Q |
1 |
caaggctgattctcacagaaccagagctaataaaagatgtcttaaacagaacttctgaattacaaaagccaaaatatgagattttcaaatttctatttag |
100 |
Q |
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| T |
8381853 |
caaggctgattctcacagaaccagagctaataaaagatgtcttaaacagaacttctgaattacaaaagccaaaatatgagattttcaaatttctatttag |
8381754 |
T |
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| Q |
101 |
tggtcttataattcacgagggagaaaagtggagaaagcatagaaggttaatgaacgctgctttccagttagaaaaattgaaggttattttcttttaacta |
200 |
Q |
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| T |
8381753 |
tggtcttataattcacgagggagaaaagtggagaaagcatagaaggttaatgaacgctgctttccagttagaaaaattgaaggttattttcttttaacta |
8381654 |
T |
|
| Q |
201 |
gatatttataaattggttcaagcatgtctctattttcctttg |
242 |
Q |
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| T |
8381653 |
gatatttataaattggttcaagcatgtctctattttcctttg |
8381612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 186
Target Start/End: Original strand, 30393800 - 30393975
Alignment:
| Q |
11 |
tctcacagaaccagagctaataaaagatgtcttaaacagaacttctgaattacaaaagccaaaatatgagattttcaaatttctatttagtggtcttata |
110 |
Q |
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| T |
30393800 |
tctcacagaacctgagcaaataaaagatgtattgaacaaaatgtctgacttcccaaagactaactataagattttcaagttactagctagtggtcttgct |
30393899 |
T |
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| Q |
111 |
attcacgagggagaaaagtggagaaagcatagaaggttaatgaacgctgctttccagttagaaaaattgaaggtta |
186 |
Q |
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| T |
30393900 |
agttatgggggagaaaaatggagcaagcatagaaggctaatcaaccctgctttccatttagaacaattgaaggtta |
30393975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 117 - 186
Target Start/End: Original strand, 30383755 - 30383824
Alignment:
| Q |
117 |
gagggagaaaagtggagaaagcatagaaggttaatgaacgctgctttccagttagaaaaattgaaggtta |
186 |
Q |
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| T |
30383755 |
gagggagaaaagtggagcaagcatagaaagctaatcaaccctgctttccatttagaaaagttgaaggtta |
30383824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 101 - 191
Target Start/End: Original strand, 30482135 - 30482225
Alignment:
| Q |
101 |
tggtcttataattcacgagggagaaaagtggagaaagcatagaaggttaatgaacgctgctttccagttagaaaaattgaaggttattttc |
191 |
Q |
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| T |
30482135 |
tggtcttataacccatgagggtgaaaagtggagcaagcatagaaagataataaatcctgcattccatttagaaaaattgaaggttagtttc |
30482225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 120 - 190
Target Start/End: Original strand, 23767286 - 23767356
Alignment:
| Q |
120 |
ggagaaaagtggagaaagcatagaaggttaatgaacgctgctttccagttagaaaaattgaaggttatttt |
190 |
Q |
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| T |
23767286 |
ggagaaaagtggaccaagcatagaaggataatcaaccctgcttttcacatggaaaaattgaaggttatttt |
23767356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 183
Target Start/End: Original strand, 30423851 - 30423933
Alignment:
| Q |
101 |
tggtcttataattcacgagggagaaaagtggagaaagcatagaaggttaatgaacgctgctttccagttagaaaaattgaagg |
183 |
Q |
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||||||||||| ||| ||||||||| ||||||| ||||| |||| | | || ||| |||| ||||| |||||||||||||||| |
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| T |
30423851 |
tggtcttataagtcatgagggagaacagtggagcaagcacagaaagattatcaaccctgcattccatttagaaaaattgaagg |
30423933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 120 - 195
Target Start/End: Complemental strand, 23784841 - 23784766
Alignment:
| Q |
120 |
ggagaaaagtggagaaagcatagaaggttaatgaacgctgctttccagttagaaaaattgaaggttattttctttt |
195 |
Q |
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|||||||||||||| ||||||||||| |||| ||| |||| || || | ||||||||||||||||| ||||||| |
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| T |
23784841 |
ggagaaaagtggagcaagcatagaagaataatcaaccctgcgtttcacatggaaaaattgaaggttatcttctttt |
23784766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 79 - 188
Target Start/End: Complemental strand, 41628832 - 41628723
Alignment:
| Q |
79 |
agattttcaaatttctatttagtggtcttataattcacgagggagaaaagtggagaaagcatagaaggttaatgaacgctgctttccagttagaaaaatt |
178 |
Q |
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| T |
41628832 |
agattttcaagttactagttagtggtcttgcaagtcttgagggagaaaagtggagcaagcatagaaggctaatcaaccccgctttccattcagaaaaatt |
41628733 |
T |
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| Q |
179 |
gaaggttatt |
188 |
Q |
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| T |
41628732 |
gaaggttatt |
41628723 |
T |
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