View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1134_low_24 (Length: 316)
Name: NF1134_low_24
Description: NF1134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1134_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 68 - 239
Target Start/End: Original strand, 39287500 - 39287671
Alignment:
| Q |
68 |
caaccccatcttccccataattcactttcactccattcctaaacacattctcaataagcattgcatttgttggttgatcgagccaagaaggccagcaaat |
167 |
Q |
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| T |
39287500 |
caaccccatcttccccataattcactttcaccccattcctaaacacattctcaataagcattgcatttgttggttgatcaagccaagaaggccagcaaat |
39287599 |
T |
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| Q |
168 |
aacaggcacaccagttatcaatgtctcaagtgttgagttccaaccacaatgacttagaaaacaagcaacagc |
239 |
Q |
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| T |
39287600 |
aacaggcacaccagttatcaatgtctcaagtgttgagttccaaccacaatgacttagaaaacaagcaacagc |
39287671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 68 - 239
Target Start/End: Complemental strand, 39491535 - 39491364
Alignment:
| Q |
68 |
caaccccatcttccccataattcactttcactccattcctaaacacattctcaataagcattgcatttgttggttgatcgagccaagaaggccagcaaat |
167 |
Q |
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||||||||||||||||||| |||||||| || ||||||||||||||||||| ||||||||| |||||||||||||| || |||||| ||||| | ||| |
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| T |
39491535 |
caaccccatcttccccatatttcacttttacaccattcctaaacacattctgaataagcatagcatttgttggttggtcagtccaagatggccaaccaat |
39491436 |
T |
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| Q |
168 |
aacaggcacaccagttatcaatgtctcaagtgttgagttccaaccacaatgacttagaaaacaagcaacagc |
239 |
Q |
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| T |
39491435 |
aacaggcacaccagttatcaatgtctcaagtgttgagttccaaccacaatgacttagaaaacaagcaacagc |
39491364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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