View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1134_low_3 (Length: 551)
Name: NF1134_low_3
Description: NF1134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1134_low_3 |
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| [»] scaffold0449 (1 HSPs) |
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Alignment Details
Target: scaffold0449 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: scaffold0449
Description:
Target: scaffold0449; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 1 - 460
Target Start/End: Complemental strand, 4184 - 3724
Alignment:
| Q |
1 |
ccaaaaggtatgcattcttggcctttctgaggacttgaaagatgacattgagaaaatttcagtatacattcttggcctttgcatgagtttcttctcatat |
100 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
4184 |
ccaaaaggtatgcattcttggcctttctcaggacttgaaagatcacattgagaaaatttcagtatgcattcttggcctttgcatgagtttcttctcatat |
4085 |
T |
|
| Q |
101 |
gaccctcccacatcagagatagtgaaagagtttacgatatttgctgcgtcgtcatttgtatgttacattctctcaatcatcctcaagaaaaccctaatgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4084 |
gaccctcccacatcagagatagtgaaagagtttacgatatttgctgcgtcgtcatttgtatgttacattctctcaatcatcctcaagaaaaccctaatgc |
3985 |
T |
|
| Q |
201 |
tctgcccaacctgaaccagctgccgcgcgataactttgatatgtgattttctatttttctttggatggtgcttttacgcgctgctcatgctccaatatgt |
300 |
Q |
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||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3984 |
tctgcccaacctggaccagccgccgcgccataactttgatatgtgattttctatttttctttggatggtgcttttacgcgctgctcatgctccaatatgt |
3885 |
T |
|
| Q |
301 |
cattcctctcaaagatcttggcctctccactttcactataactatactctatctactctctactgttgttgctgccccc-tttgatgtatgtggctagca |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
3884 |
cattcctctcaaagatcttggcctctccactttcactacaactatactctatctactctctactgttgttgctgcccccttttgatgtatgtggctagca |
3785 |
T |
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| Q |
400 |
tgcatcttgtttatttactcagtatcattgttattttcatttatatatgcagattgttcct |
460 |
Q |
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|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
3784 |
tgcaacttgtttatttacccagtatcattgttattttcatttatatatgcagattgttcct |
3724 |
T |
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