View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1134_low_40 (Length: 227)
Name: NF1134_low_40
Description: NF1134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1134_low_40 |
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Alignment Details
Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 102 - 147
Target Start/End: Original strand, 54729359 - 54729404
Alignment:
| Q |
102 |
tcaaggaatgttggagcttatacaagattaccaatcaagcaacagc |
147 |
Q |
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| T |
54729359 |
tcaaggaatgttagagcttatacaagattaccaatcaagcaacagc |
54729404 |
T |
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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 102 - 147
Target Start/End: Original strand, 5303750 - 5303795
Alignment:
| Q |
102 |
tcaaggaatgttggagcttatacaagattaccaatcaagcaacagc |
147 |
Q |
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|||||||||||| |||||||||||||||||||||||||| |||||| |
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| T |
5303750 |
tcaaggaatgttagagcttatacaagattaccaatcaagaaacagc |
5303795 |
T |
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