View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1134_low_47 (Length: 208)
Name: NF1134_low_47
Description: NF1134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1134_low_47 |
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Alignment Details
Target: chr5 (Bit Score: 92; Significance: 7e-45; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 38392780 - 38392875
Alignment:
| Q |
1 |
ctcatttttgtatgacttaatccacaagaactgaaatcagaacaaaacaattcaatggagagaaaagaaagaaaataacaagttagaggatgcatg |
96 |
Q |
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| T |
38392780 |
ctcatttttgtatgacttaatccacaagaactgaaattagaacaaaacaattcaatggagagaaaagaaagaaaataacaagttagaggatgcatg |
38392875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 6 - 74
Target Start/End: Original strand, 38383927 - 38383995
Alignment:
| Q |
6 |
ttttgtatgacttaatccacaagaactgaaatcagaacaaaacaattcaatggagagaaaagaaagaaa |
74 |
Q |
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| T |
38383927 |
ttttgtatgacttaatccacaagaattgaaattagaacaaaacaattcaatggagagaaaagaaagaaa |
38383995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 38401356 - 38401429
Alignment:
| Q |
1 |
ctcatttttgtatgacttaatccacaagaactgaaatcagaacaaaacaattcaatggagagaaaagaaagaaa |
74 |
Q |
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| T |
38401356 |
ctcattttcgtatgacttaattcacaagaattgaaattagaacaaaacaattcaatggagtgaaaagaaagaaa |
38401429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 37838439 - 37838366
Alignment:
| Q |
1 |
ctcatttttgtatgacttaatccacaagaactgaaatcagaacaaaacaattcaatggagagaaaagaaagaaa |
74 |
Q |
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|||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||| |
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| T |
37838439 |
ctcatttttgtatgacttaatccacaagaattgaaatgaaaacaaaacaattcaatggagagaaaagaaagaaa |
37838366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 37844002 - 37843920
Alignment:
| Q |
1 |
ctcatttttgtatgacttaatccacaagaactgaaatcagaacaaaacaattcaatggagagaaaa--gaaagaaaataacaa |
81 |
Q |
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||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
37844002 |
ctcatttttgtatgacttattccacaagaattgaaattagaacaaaacaattcaatggagagagaatggaaagaaaataacaa |
37843920 |
T |
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