View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1134_low_48 (Length: 206)
Name: NF1134_low_48
Description: NF1134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1134_low_48 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 120; Significance: 1e-61; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 28609236 - 28609109
Alignment:
| Q |
1 |
ttgagggatgtgggaatatcttcagcagaatggacatcaacttctgaataagatatagaatcattgctgttcatcgttgtcaatctaaatccattaacat |
100 |
Q |
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| T |
28609236 |
ttgagggatgtgggaatatcttcagcagaatggacatcaacttctgaataagatatagaatcattgttgttcatcgttgtcaatctaaatccattaacat |
28609137 |
T |
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| Q |
101 |
actcatcatctaattccctttgcttctc |
128 |
Q |
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| T |
28609136 |
actcatcatctaattccttttgcttctc |
28609109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 437668 - 437795
Alignment:
| Q |
1 |
ttgagggatgtgggaatatcttcagcagaatggacatcaacttctgaataagatatagaatcattgctgttcatcgttgtcaatctaaatccattaacat |
100 |
Q |
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| T |
437668 |
ttgagggttgtgggaatatcttcacctgaatggacattaacttctgaataagatatagaatcattgttgttcatcgctgtcaatctaaatccattcacat |
437767 |
T |
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| Q |
101 |
actcatcatctaattccctttgcttctc |
128 |
Q |
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| T |
437768 |
actcatcatctaactccttctgcttctc |
437795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 13653099 - 13653042
Alignment:
| Q |
9 |
tgtgggaatatcttcagcagaatggacatcaacttctgaataagatatagaatcattg |
66 |
Q |
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| T |
13653099 |
tgtgggaatatcttcacctgaatggacatcaacctctgaataggatataaaatcattg |
13653042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 13660599 - 13660542
Alignment:
| Q |
9 |
tgtgggaatatcttcagcagaatggacatcaacttctgaataagatatagaatcattg |
66 |
Q |
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|||||||||||||||| |||||||||||||| || ||||| ||||||||||||||| |
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| T |
13660599 |
tgtgggaatatcttcacttgaatggacatcaacctccgaatatgatatagaatcattg |
13660542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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