View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1134_low_49 (Length: 205)

Name: NF1134_low_49
Description: NF1134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1134_low_49
NF1134_low_49
[»] chr4 (2 HSPs)
chr4 (10-71)||(7108856-7108916)
chr4 (10-69)||(53062696-53062755)
[»] chr5 (3 HSPs)
chr5 (10-74)||(33657374-33657438)
chr5 (11-69)||(16363537-16363595)
chr5 (5-38)||(234177-234210)
[»] chr2 (2 HSPs)
chr2 (14-69)||(41319186-41319241)
chr2 (35-74)||(42577635-42577674)
[»] chr8 (1 HSPs)
chr8 (16-69)||(2080085-2080138)
[»] chr1 (1 HSPs)
chr1 (22-74)||(7384330-7384382)


Alignment Details
Target: chr4 (Bit Score: 54; Significance: 3e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 10 - 71
Target Start/End: Original strand, 7108856 - 7108916
Alignment:
Q  10 tgggtcccacgtgttttaactctctcccccctatttctctggcttccaaacaagagaaataa 71  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  7108856 tgggtcccacgtgttttaactctctcccc-ctatttctctggcttccaaacaagagaaataa 7108916  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 10 - 69
Target Start/End: Original strand, 53062696 - 53062755
Alignment:
Q  10 tgggtcccacgtgttttaactctctcccccctatttctctggcttccaaacaagagaaat 69  Q
    ||||||||| |||||||||||||||| ||||||||| | ||| |||||||||||||||||    
T  53062696 tgggtcccatgtgttttaactctctctcccctatttttttggtttccaaacaagagaaat 53062755  T

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Target: chr5 (Bit Score: 53; Significance: 1e-21; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 10 - 74
Target Start/End: Original strand, 33657374 - 33657438
Alignment:
Q  10 tgggtcccacgtgttttaactctctcccccctatttctctggcttccaaacaagagaaataacca 74  Q
    |||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||    
T  33657374 tgggtcccacgtgttttaactctctcccccctatttctttagctttcaaacaagagaaataacca 33657438  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 69
Target Start/End: Complemental strand, 16363595 - 16363537
Alignment:
Q  11 gggtcccacgtgttttaactctctcccccctatttctctggcttccaaacaagagaaat 69  Q
    |||||||||||| ||| ||| |||| ||||||||||| ||  |||||||||||||||||    
T  16363595 gggtcccacgtgctttgactttctctcccctatttctttgatttccaaacaagagaaat 16363537  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 234177 - 234210
Alignment:
Q  5 atatatgggtcccacgtgttttaactctctcccc 38  Q
    |||| |||||||||||||||||||||||||||||    
T  234177 atatgtgggtcccacgtgttttaactctctcccc 234210  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 41319241 - 41319186
Alignment:
Q  14 tcccacgtgttttaactctctcccccctatttctctggcttccaaacaagagaaat 69  Q
    ||||| ||||||||||||||||  |||||||||| ||| |||||||||||||||||    
T  41319241 tcccatgtgttttaactctctcttccctatttctttggtttccaaacaagagaaat 41319186  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 74
Target Start/End: Complemental strand, 42577674 - 42577635
Alignment:
Q  35 cccccctatttctctggcttccaaacaagagaaataacca 74  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  42577674 cccccctatttctctagcttccaaacaagagaaataacca 42577635  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 2080085 - 2080138
Alignment:
Q  16 ccacgtgttttaactctctcccccctatttctctggcttccaaacaagagaaat 69  Q
    |||| ||||||||||||| | ||||||||||| ||  |||||||||||||||||    
T  2080085 ccacatgttttaactctcactcccctatttctttgatttccaaacaagagaaat 2080138  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 7384330 - 7384382
Alignment:
Q  22 gttttaactctctcccccctatttctctggcttccaaacaagagaaataacca 74  Q
    |||||||||||||| ||| |||||||  || ||||||||||||||||| ||||    
T  7384330 gttttaactctctctcccttatttcttaggtttccaaacaagagaaatgacca 7384382  T

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