View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1134_low_5 (Length: 519)
Name: NF1134_low_5
Description: NF1134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1134_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 75 - 478
Target Start/End: Original strand, 20368263 - 20368667
Alignment:
| Q |
75 |
gaaacaaaggaagggagtgtgttacttgtggccctaacaagtcttttgaagatttttcagatatttacgctctcattatgaaaacttataactcatataa |
174 |
Q |
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| T |
20368263 |
gaaacaaaagaagggagtgtgttacttgtggcccaaacaagtcttttgaagatttttcagatatttacgccctcattatgaaaacttataactcatataa |
20368362 |
T |
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| Q |
175 |
tgttaatttacgttttgatcatttgggattnnnnnnnctttgtgtcccttaatgtgctggaatcactcaaaggcttatcattctgtatatgatgatgatg |
274 |
Q |
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| T |
20368363 |
tgttaatttacgttttgatcatttgggattaaaaaaactttgtgtcccttaatgtgttggaatcacttaaaggcttatcattatgtatatgatgatgatg |
20368462 |
T |
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| Q |
275 |
cagaagaaaatcaggatgatctatcgacggaaaatcaaagacactgattaaatttgctgggaatagatctggcttgaaggagccgatgcggctaggtgaa |
374 |
Q |
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| T |
20368463 |
cagaagaaaatcaggatgatctatcgatggaaaatcaaagacactggttaaatttgatgggaccatatctggcttgaaggagccgatgcggctaggtgaa |
20368562 |
T |
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| Q |
375 |
cactttaagatggaaaatcacagacgctaggaccgagctcgtgtgcactcccaaacattg-gaaaggataatgagaacaatagaaaccttgtgaaggttt |
473 |
Q |
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| T |
20368563 |
cactttaagatggaaaatcacagacgctaggaccgagctcgtgtgcactctcaaacattgagaaaggataatgagaacaataaaaaccttgtgaaggttt |
20368662 |
T |
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| Q |
474 |
atgag |
478 |
Q |
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| T |
20368663 |
atgag |
20368667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 409 - 468
Target Start/End: Complemental strand, 20368771 - 20368711
Alignment:
| Q |
409 |
gagctcgtgtgcactcccaaacatt-ggaaaggataatgagaacaatagaaaccttgtgaa |
468 |
Q |
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| T |
20368771 |
gagcttgtgtccagtcccaaacattaggaaaggatgatgaaaacaatacaaaccttgtgaa |
20368711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 8e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 319 - 478
Target Start/End: Complemental strand, 46951420 - 46951260
Alignment:
| Q |
319 |
tgattaaatttgctgggaatagatctggcttgaaggagccgatgcggctaggtgaacactttaagatggaaaatcacagacgctaggaccgagctcgtgt |
418 |
Q |
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| T |
46951420 |
tgattaaatttgctggtgacaaatcaggcttggaggaggccatgcggcttggtgaacactttaagaaggaaaatcacggccgcaaggactgggttcgcgt |
46951321 |
T |
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| Q |
419 |
gcactcccaaacatt-ggaaaggataatgagaacaatagaaaccttgtgaaggtttatgag |
478 |
Q |
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| T |
46951320 |
gcaggcccaaacattaggaaaggacaatgagaataacccaaaccttgtgaagtttgatgag |
46951260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 204
Target Start/End: Complemental strand, 46956131 - 46956050
Alignment:
| Q |
123 |
aagatttttcagatatttacgctctcattatgaaaacttataactcatataatgttaatttacgttttgatcatttgggatt |
204 |
Q |
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|||||||||||||||| | |||||||||||| | || | |||||| |||||| | |||||||| ||||||||||||||| |
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| T |
46956131 |
aagatttttcagatatacatgctctcattatgcatacgttcaactcagataatgctgatttacgtgctgatcatttgggatt |
46956050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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