View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1134_low_9 (Length: 445)
Name: NF1134_low_9
Description: NF1134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1134_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 82 - 328
Target Start/End: Complemental strand, 39747988 - 39747742
Alignment:
| Q |
82 |
atattaagaagattcaattgaaattgtaaacnnnnnnnttgtactatttttacaatcccttgtttttaggggaaagagatatgataatctaaagtttagt |
181 |
Q |
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| T |
39747988 |
atattaagaagattcaattgaaattgtaaaaaaaaaaattgtactattttaacaatcccttattttcaggggaatgagatatgataatctaaagtttagt |
39747889 |
T |
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| Q |
182 |
cgagaggtaattgaagtctgataaaaaattgtttcacacataaatcaaaatcttcacattgttgatgtcatgcattaaattagtctttaattaatattaa |
281 |
Q |
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| T |
39747888 |
cgagaggtaagtgaagtctaataaaaaattgtttaacacataaatcaaaatctttacattgttgatgtcatgcattaaattagtctttaattaatattaa |
39747789 |
T |
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| Q |
282 |
tatgtggaaatacctaaatattcagatttaagaccaacaaacataac |
328 |
Q |
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| T |
39747788 |
tatgtggaaatacctaaatattcagatttaagaccaacaaacataac |
39747742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 353 - 416
Target Start/End: Complemental strand, 39747722 - 39747659
Alignment:
| Q |
353 |
attgttgttaacatttaaaaataatctaagaaaaacaacctaagactaaattaagggtgagttg |
416 |
Q |
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| T |
39747722 |
attgttgttaacatttaaaaataatctaagaaaaacaaccttagactaaattaagggtgagttg |
39747659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 198 - 230
Target Start/End: Complemental strand, 41932077 - 41932045
Alignment:
| Q |
198 |
tctgataaaaaattgtttcacacataaatcaaa |
230 |
Q |
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| T |
41932077 |
tctgataaaaaattgtttcactcataaatcaaa |
41932045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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