View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11350_high_3 (Length: 273)
Name: NF11350_high_3
Description: NF11350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11350_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 37220812 - 37220558
Alignment:
| Q |
1 |
caaattgaactttatcttttaaatctttgatatattcagctggttgcaactttatcttttagatctttgatattcagctagtagtatattgtaacaacaa |
100 |
Q |
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| T |
37220812 |
caaattgaactttatcttttaaatctttgatatattcagctggtttcaactttatcttttagatctttgatattcagctagtagtatattgtaacaacaa |
37220713 |
T |
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| Q |
101 |
tannnnnnnnnaagtgaagtaacaaaaactctccgtatttacctctaactactttataaatcctattataaatagaacaatttccatcctctcatccttc |
200 |
Q |
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| T |
37220712 |
tatatttttttaagtgaagttacaaaaactctccgtatttacctctaactactttataaatcctattataaatacaacaatttccatcctctcatccttc |
37220613 |
T |
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| Q |
201 |
cgtaagtaatcatgtcaaattctaatggcagtgatactataaagttgaagaaagg |
255 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37220612 |
cgtaagtaatcatgtcaaattctaatggcagtgatactataaagttgaagaaagg |
37220558 |
T |
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