View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11350_low_2 (Length: 295)
Name: NF11350_low_2
Description: NF11350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11350_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 10215816 - 10215542
Alignment:
| Q |
1 |
ctttaccaattgattaatatgtttaagccgattaattagtcttgagatgattgcataacttcatagacatatgttgacttgatttactgataataatgat |
100 |
Q |
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| T |
10215816 |
ctttaccacttgtataatatgtttaagctgattaattagtcttgagatgattgcataacttcatagacctatgttgacttgatttattgataataatgat |
10215717 |
T |
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| Q |
101 |
tagttatatgataatcagtaacattctggagatagtggtttctgcaatacaatgttactcttggcactagtcatttcgcatgttaacattggacatgaca |
200 |
Q |
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| T |
10215716 |
tagttatatgataatcagtaacattctggagatagtggtttctgcaatacaatgttactcttggcactagtcatttcgcatgttaacaatggacatgaca |
10215617 |
T |
|
| Q |
201 |
aaatagggtattctgctgtcgaaatatatggtggggtaataaaatgttgaggacaagaaaaactcacctgaggaga |
276 |
Q |
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| T |
10215616 |
aaatagggtattctgctgtcgaaatatatggtgggataataaaatgttgaggacaag-aaaactcacctgaggaga |
10215542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 42 - 216
Target Start/End: Original strand, 13854744 - 13854918
Alignment:
| Q |
42 |
ttgagatgattgcataacttcatagacatatgttgacttgatttactgataataatgattagttatatgataatcagtaacattctggagatagtggttt |
141 |
Q |
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| T |
13854744 |
ttgaaatgatagcataacttcatagaccaatgctgacttgatttatggatgacaatgatttgttatttgataatcagtaacgttccggagatagtagttt |
13854843 |
T |
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| Q |
142 |
ctgcaatacaatgttactcttggcactagtcatttcgcatgttaacattggacatgacaaaatagggtattctgc |
216 |
Q |
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| T |
13854844 |
ttgcaatgccatgttattcttagcactagtcatttcgtatgttaacaatggccaggacaaaagagggtattctgc |
13854918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 117 - 225
Target Start/End: Complemental strand, 10211960 - 10211852
Alignment:
| Q |
117 |
agtaacattctggagatagtggtttctgcaatacaatgttactcttggcactagtcatttcgcatgttaacattggacatgacaaaatagggtattctgc |
216 |
Q |
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||||||||||||||||| |||||||||||||||| || |||||||| ||||||| |||| ||||||||||| ||| || ||||||| |||||||||||| |
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| T |
10211960 |
agtaacattctggagatggtggtttctgcaataccattttactcttaacactagtaattttgcatgttaacaatggccaggacaaaagagggtattctgc |
10211861 |
T |
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| Q |
217 |
tgtcgaaat |
225 |
Q |
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| T |
10211860 |
tgtcgaaat |
10211852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 86
Target Start/End: Original strand, 10104247 - 10104298
Alignment:
| Q |
35 |
attagtcttgagatgattgcataacttcatagacatatgttgacttgattta |
86 |
Q |
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| T |
10104247 |
attagtcttgagatgattgcataatttcatagaccattgttgacttgattta |
10104298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 86
Target Start/End: Original strand, 10107727 - 10107778
Alignment:
| Q |
35 |
attagtcttgagatgattgcataacttcatagacatatgttgacttgattta |
86 |
Q |
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| T |
10107727 |
attagtcttgagatgattgcataatttcatagaccattgttgacttgattta |
10107778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 182
Target Start/End: Original strand, 10104351 - 10104401
Alignment:
| Q |
132 |
atagtggtttctgcaatacaatgttactcttggcactagtcatttcgcatg |
182 |
Q |
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||||| ||||||||||||| ||||||||||| ||||||||||||| ||||| |
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| T |
10104351 |
atagtagtttctgcaataccatgttactcttagcactagtcatttggcatg |
10104401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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