View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11351_low_5 (Length: 278)
Name: NF11351_low_5
Description: NF11351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11351_low_5 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 257; Significance: 1e-143; HSPs: 12)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 13874744 - 13875012
Alignment:
| Q |
1 |
atcttgcaaacttggtcttacatttccaaaatggattcagacacaaaatcactttcaggatattgatatttctaattctggaatttcagataatgttgcc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
13874744 |
atcttgcaaacttggtcttacatttccaaaatggattcagacacaaaatcactttcaggatattgatatttctaattctggaatttcagataatgttccc |
13874843 |
T |
|
| Q |
101 |
gagtggttttgggctaaactgtcatcacaagagtgcaagacaatcaacatttcatacaacaatctcaaaggattaattccgaatcttcatgtaaaaaatc |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13874844 |
gagtggttttgggctaaactatcatcacaagagtgcaagacaatcaacatttcatacaacaatctcaaaggattaattccgaatcttcatgtaaaaaatc |
13874943 |
T |
|
| Q |
201 |
attgttcttttttatctcttgcatcaaatcaatttgaaggctccattccaccatttctcacaggttctg |
269 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
13874944 |
attgttcttttttatctcttgcatcaaatcaatttgaaggctccattccaccatttctcagaggttctg |
13875012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 5 - 268
Target Start/End: Original strand, 13472445 - 13472708
Alignment:
| Q |
5 |
tgcaaacttggtcttacatttccaaaatggattcagacacaaaatcactttcaggatattgatatttctaattctggaatttcagataatgttgccgagt |
104 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| || | || || |||||||||||||| ||||||||||||||||||| | |||| |
|
|
| T |
13472445 |
tgcaaacttggtcttacatttcccaaatggattcagacacaaaaatacctgcacaatcttgatatttctaatggtggaatttcagataatgttccagagt |
13472544 |
T |
|
| Q |
105 |
ggttttgggctaaactgtcatcacaagagtgcaagacaatcaacatttcatacaacaatctcaaaggattaattccgaatcttcatgtaaaaaatcattg |
204 |
Q |
| |
|
|||||||| ||||||| ||||| ||||| ||| | |||||||||||| || ||||||||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
13472545 |
ggttttggtctaaactatcatcccaagactgctctagaatcaacatttcctataacaatctcaaaggattaattccaaatcttcaagtaaaaaatcattg |
13472644 |
T |
|
| Q |
205 |
ttcttttttatctcttgcatcaaatcaatttgaaggctccattccaccatttctcacaggttct |
268 |
Q |
| |
|
||||||||||| |||| |||||||| |||||||||| ||||||||||||||||| | ||||||| |
|
|
| T |
13472645 |
ttcttttttatatctttcatcaaatgaatttgaagggtccattccaccatttctaagaggttct |
13472708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 5 - 268
Target Start/End: Complemental strand, 14025898 - 14025635
Alignment:
| Q |
5 |
tgcaaacttggtcttacatttccaaaatggattcagacacaaaatcactttcaggatattgatatttctaattctggaatttcagataatgttgccgagt |
104 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| || | |||||| |||||||||| || |||||||||||||||||||| | |||| |
|
|
| T |
14025898 |
tgcaaacttggtcttacatttcctaaatggattcagacacaaaagtacctgcaggatcttgatatttcgaaggctggaatttcagataatgttccagagt |
14025799 |
T |
|
| Q |
105 |
ggttttgggctaaactgtcatcacaagagtgcaagacaatcaacatttcatacaacaatctcaaaggattaattccgaatcttcatgtaaaaaatcattg |
204 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||| | |||||||||||| |||| |||||||||||||||||||| |||||||| || ||||||| ||| |
|
|
| T |
14025798 |
ggttttgggctaaactatcatcacaatggtgcaacaacatcaacatttcaaacaataatctcaaaggattaattccaaatcttcaagtcaaaaatcgttg |
14025699 |
T |
|
| Q |
205 |
ttcttttttatctcttgcatcaaatcaatttgaaggctccattccaccatttctcacaggttct |
268 |
Q |
| |
|
|||| ||||||||||| |||||||| |||||||||| | |||||||||||||| | ||||||| |
|
|
| T |
14025698 |
ttctgttttatctctttcatcaaatgaatttgaagggcctattccaccatttctaaaaggttct |
14025635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 5 - 268
Target Start/End: Original strand, 13892452 - 13892715
Alignment:
| Q |
5 |
tgcaaacttggtcttacatttccaaaatggattcagacacaaaatcactttcaggatattgatatttctaattctggaatttcagataatgttgccgagt |
104 |
Q |
| |
|
||||||||||||| ||||||||| || ||||||||||||||||| ||| |||| || |||||||||||||| |||||||||||||||||||| | |||| |
|
|
| T |
13892452 |
tgcaaacttggtcctacatttcctaactggattcagacacaaaaacacattcaaaatcttgatatttctaatgctggaatttcagataatgttccagagt |
13892551 |
T |
|
| Q |
105 |
ggttttgggctaaactgtcatcacaagagtgcaagacaatcaacatttcatacaacaatctcaaaggattaattccgaatcttcatgtaaaaaatcattg |
204 |
Q |
| |
|
|||||||||||||| | |||| | ||||||||| | |||||||||||| |||| |||||||||||||||||||| |||||||| || |||||| |||| |
|
|
| T |
13892552 |
ggttttgggctaaattatcattaaaagagtgcagaagcatcaacatttcaaacaataatctcaaaggattaattccaaatcttcaagtcaaaaattattg |
13892651 |
T |
|
| Q |
205 |
ttcttttttatctcttgcatcaaatcaatttgaaggctccattccaccatttctcacaggttct |
268 |
Q |
| |
|
|||| ||||||||||| |||||||| |||||||||| | |||||||||||||| | ||||||| |
|
|
| T |
13892652 |
ttctattttatctctttcatcaaatgaatttgaagggcctattccaccatttctaaaaggttct |
13892715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 5 - 267
Target Start/End: Complemental strand, 14085284 - 14085022
Alignment:
| Q |
5 |
tgcaaacttggtcttacatttccaaaatggattcagacacaaaatcactttcaggatattgatatttctaattctggaatttcagataatgttgccgagt |
104 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||||||||| |||||| || |||||||||||||| ||||| ||||||||||| || | |||| |
|
|
| T |
14085284 |
tgcaaacttggttcaacatttcctaaatggattcagacacaaaaatactttcgatatcttgatatttctaatgctggagtttcagataatattccagagt |
14085185 |
T |
|
| Q |
105 |
ggttttgggctaaactgtcatcacaagagtgcaagacaatcaacatttcatacaacaatctcaaaggattaattccgaatcttcatgtaaaaaatcattg |
204 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||| |||||||||| |||| ||||||||| ||||||||| |||||||||||| || ||| |||| |||| |
|
|
| T |
14085184 |
ggttttgggcaaaactatcatcacaagagtgcaggacaatcaacctttcttacaacaatttcaaaggatcaattccgaatctccacataagaaattattg |
14085085 |
T |
|
| Q |
205 |
ttcttttttatctcttgcatcaaatcaatttgaaggctccattccaccatttctcacaggttc |
267 |
Q |
| |
|
||||||||||| ||| |||||||| |||||||||| |||||||||||||||| | |||||| |
|
|
| T |
14085084 |
ttcttttttatttctgtcatcaaatgaatttgaaggtcccattccaccatttcttagaggttc |
14085022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 6 - 240
Target Start/End: Complemental strand, 13932964 - 13932730
Alignment:
| Q |
6 |
gcaaacttggtcttacatttccaaaatggattcagacacaaaatcactttcaggatattgatatttctaattctggaatttcagataatgttgccgagtg |
105 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| || | | |||| |||||||||| || |||||||||||||||||||| | ||||| |
|
|
| T |
13932964 |
gcaaacttggtcttacatttcctaaatggattcagacacaaaagtacctgctggatcttgatatttcgaaggctggaatttcagataatgttccagagtg |
13932865 |
T |
|
| Q |
106 |
gttttgggctaaactgtcatcacaagagtgcaagacaatcaacatttcatacaacaatctcaaaggattaattccgaatcttcatgtaaaaaatcattgt |
205 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||| | ||||| |||||| |||| ||||||||||| | |||||| |||||||| || |||||||| ||| |
|
|
| T |
13932864 |
gttttgggctaaactatcatcacaagaatgcaacagcatcaatatttcaaacaataatctcaaaggttcaattccaaatcttcaagtcaaaaatcactgt |
13932765 |
T |
|
| Q |
206 |
tcttttttatctcttgcatcaaatcaatttgaagg |
240 |
Q |
| |
|
||| ||||||||||| |||||||| |||||||||| |
|
|
| T |
13932764 |
tctcttttatctctttcatcaaatgaatttgaagg |
13932730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 5 - 258
Target Start/End: Complemental strand, 14111093 - 14110840
Alignment:
| Q |
5 |
tgcaaacttggtcttacatttccaaaatggattcagacacaaaatcactttcaggatattgatatttctaattctggaatttcagataatgttgccgagt |
104 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| || || | | | |||||||||||||| |||||||||||||||||||| | |||| |
|
|
| T |
14111093 |
tgcaaacttggtcttacatttcctaaatggattcagacacagaagtacctgctcattcttgatatttctaatgctggaatttcagataatgttccggagt |
14110994 |
T |
|
| Q |
105 |
ggttttgggctaaactgtcatcacaagagtgcaagacaatcaacatttcatacaacaatctcaaaggattaattccgaatcttcatgtaaaaaatcattg |
204 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||| || |||||| ||||| |||| |||||||||||| ||||||| |||||||| ||||||||| |||| |
|
|
| T |
14110993 |
ggttttgggctaaactatcatcacaaaagtgcaggagcatcaacgtttcaaacaataatctcaaaggaataattccaaatcttcaagtaaaaaattattg |
14110894 |
T |
|
| Q |
205 |
ttcttttttatctcttgcatcaaatcaatttgaaggctccattccaccatttct |
258 |
Q |
| |
|
||| |||||||||| ||| |||| |||||||||| |||||||||||||||| |
|
|
| T |
14110893 |
ctctagtttatctctttcattaaatgaatttgaagggcccattccaccatttct |
14110840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 5 - 258
Target Start/End: Complemental strand, 14047947 - 14047694
Alignment:
| Q |
5 |
tgcaaacttggtcttacatttccaaaatggattcagacacaaaatcactttcaggatattgatatttctaattctggaatttcagataatgttgccgagt |
104 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||| ||||||||| || | || || |||||||||| ||| |||||||||||||||||||| | |||| |
|
|
| T |
14047947 |
tgcaaacttggtcttacgtttcctaaatggattctgacacaaaaatacctgcattatcttgatatttcgaatgctggaatttcagataatgttccagagt |
14047848 |
T |
|
| Q |
105 |
ggttttgggctaaactgtcatcacaagagtgcaagacaatcaacatttcatacaacaatctcaaaggattaattccgaatcttcatgtaaaaaatcattg |
204 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||| | || ||||||| | |||| |||||||||||||||||||| |||||||| | |||| ||| || |
|
|
| T |
14047847 |
ggttttgggctaaactatcatcaccagagtgcagcaacatgaacattttaaacaataatctcaaaggattaattccaaatcttcaagccaaaagtcaatg |
14047748 |
T |
|
| Q |
205 |
ttcttttttatctcttgcatcaaatcaatttgaaggctccattccaccatttct |
258 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||| |||| |||||| ||||| |
|
|
| T |
14047747 |
ttcttttttatctctttcatcaaatgaatttgaagggtccactccaccttttct |
14047694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 5 - 258
Target Start/End: Complemental strand, 14015769 - 14015514
Alignment:
| Q |
5 |
tgcaaacttggtcttacatttccaaaatggattcagacacaaaatcactttcaggatattgatatttctaattctggaatttcagataatgttgccgagt |
104 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| ||| |||| || |||||||||| ||| ||||||||||||||||| || | |||| |
|
|
| T |
14015769 |
tgcaaacttggtcttacatttcctaaatggattcagacacaaaaacacattcacaatcttgatatttcgaatgctggaatttcagataatattccagagt |
14015670 |
T |
|
| Q |
105 |
ggttttgggctaaactgtcatcacaagagtgcaagacaatcaacatttcatacaacaatctcaaaggattaattccgaatcttcatgtaaaaaatcattg |
204 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| | |||||||||||| |||| ||||||||||| | |||||| |||||||| || |||| | ||| |
|
|
| T |
14015669 |
ggttttgggctaaactatcatcacaagagtgctaccgcatcaacatttcaaacaataatctcaaaggttcaattccaaatcttcaagtcaaaattaattt |
14015570 |
T |
|
| Q |
205 |
ttcttttt--tatctcttgcatcaaatcaatttgaaggctccattccaccatttct |
258 |
Q |
| |
|
|| ||||| |||||||| |||||||| |||||||||| | |||||| ||||||| |
|
|
| T |
14015569 |
tttttttttatatctctttcatcaaatgaatttgaagggcctattccagcatttct |
14015514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 5 - 137
Target Start/End: Complemental strand, 13928956 - 13928824
Alignment:
| Q |
5 |
tgcaaacttggtcttacatttccaaaatggattcagacacaaaatcactttcaggatattgatatttctaattctggaatttcagataatgttgccgagt |
104 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| ||| ||| | || |||||||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
13928956 |
tgcaaacttggtcttacatttcctaaatggattcagacacaaaaacacattctgaatcttgatatttctaatgctggaatttcagataatgttcccgagt |
13928857 |
T |
|
| Q |
105 |
ggttttgggctaaactgtcatcacaagagtgca |
137 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |
|
|
| T |
13928856 |
ggttttgggctaaactatcatcacaagagtgca |
13928824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 65 - 258
Target Start/End: Original strand, 13862338 - 13862531
Alignment:
| Q |
65 |
gatatttctaattctggaatttcagataatgttgccgagtggttttgggctaaactgtcatcacaagagtgcaagacaatcaacatttcatacaacaatc |
164 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||| | ||||||||||||| ||| || |||| ||| |||||| ||||| ||||||||| |||| |||| |
|
|
| T |
13862338 |
gatatttctaatgctgaaatttcagataatgttcctgagtggttttgggataatctatcattgcaaatgtgcaatacaataaacatttcaaacaataatc |
13862437 |
T |
|
| Q |
165 |
tcaaaggattaattccgaatcttcatgtaaaaaatcattgttcttttttatctcttgcatcaaatcaatttgaaggctccattccaccatttct |
258 |
Q |
| |
|
| ||||||| |||||| ||| | | ||||||||||| |||||| ||||||||||| |||||||| | |||||||| |||||||||||||||| |
|
|
| T |
13862438 |
ttaaaggatcaattccaaatttaaaagtaaaaaatcactgttctcttttatctctttcatcaaatgattttgaagggcccattccaccatttct |
13862531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 150 - 268
Target Start/End: Complemental strand, 13912295 - 13912177
Alignment:
| Q |
150 |
tttcatacaacaatctcaaaggattaattccgaatcttcatgtaaaaaatcattgttcttttttatctcttgcatcaaatcaatttgaaggctccattcc |
249 |
Q |
| |
|
||||| |||| ||||||||||| |||||||| |||||||| |||||||||| ||||||| ||||||| ||| |||||||| |||||||||| ||||||| |
|
|
| T |
13912295 |
tttcaaacaataatctcaaaggcttaattccaaatcttcaagtaaaaaatctttgttctgttttatcactttcatcaaatgaatttgaagggcccattcc |
13912196 |
T |
|
| Q |
250 |
accatttctcacaggttct |
268 |
Q |
| |
|
||||||||||| ||||||| |
|
|
| T |
13912195 |
accatttctcaaaggttct |
13912177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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