View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11352_low_1 (Length: 683)

Name: NF11352_low_1
Description: NF11352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11352_low_1
NF11352_low_1
[»] chr3 (1 HSPs)
chr3 (1-671)||(7948329-7948999)
[»] chr5 (5 HSPs)
chr5 (2-42)||(4014795-4014835)
chr5 (1-41)||(38866454-38866494)
chr5 (1-50)||(38749582-38749630)
chr5 (1-50)||(43208293-43208341)
chr5 (1-41)||(28296329-28296368)
[»] chr7 (3 HSPs)
chr7 (1-36)||(36013817-36013852)
chr7 (1-41)||(1334916-1334956)
chr7 (1-41)||(38134425-38134464)
[»] chr2 (3 HSPs)
chr2 (4-51)||(7803438-7803484)
chr2 (1-44)||(18570970-18571012)
chr2 (1-41)||(40681983-40682022)
[»] chr8 (1 HSPs)
chr8 (1-41)||(10002182-10002222)
[»] chr4 (3 HSPs)
chr4 (1-53)||(5654610-5654661)
chr4 (1-41)||(18513260-18513299)
chr4 (1-53)||(44796981-44797032)


Alignment Details
Target: chr3 (Bit Score: 643; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 643; E-Value: 0
Query Start/End: Original strand, 1 - 671
Target Start/End: Complemental strand, 7948999 - 7948329
Alignment:
Q  1 tacattgaattatgtcatttttctcaaactattatcggtgttgatatgtctgtccgtttcatgtccatatccgagtcattgtttcataggttgtaattca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7948999 tacattgaattatgtcatttttctcaaactattatcggtgttgatatgtctgtccgtttcatgtccatatccgagtcattgtttcataggttgtaattca 7948900  T
Q  101 taacaacaccacacaagtgaaacagttcttatagagaacacaaaaatgttaaatctaataacagaatcagttaattctgtttatttagttacattttccg 200  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  7948899 taacaacaccacacaagtgaaacaattcttatagagaacataaaaatgttaaatctaataacagaatcagttaattctgtttatttagttacattttctg 7948800  T
Q  201 tttgttccatttccatatataaatctttgaatcattcacaaatcaattaatgaattcattcattatttctccactcttcacatcataatacaataagata 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  7948799 tttgttccatttccatatataaatctttgaatcattcacaaatcaatcaatgaattcattcattatttcttcacttttcacatcataatacaataagata 7948700  T
Q  301 acaaaggactaatataaaaaccataagagagaaatcaaatttattttattttctgcaagttggatacaaaacttgaaccagcaaaaccagcagaaccacc 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7948699 acaaaggactaatataaaaaccataagagagaaatcaaatttattttattttctgcaagttggatacaaaacttgaaccagcaaaaccagcagaaccacc 7948600  T
Q  401 aacaacacagatcaaagcaaccacagcctgcaatccaacctcgacaacattatcttcgggaacaagataaacaaacaaaggacctaaaagaagcaaaaca 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7948599 aacaacacagatcaaagcaaccacagcctgcaatccaacctcgacaacattatcttcgggaacaagataaacaaacaaaggacctaaaagaagcaaaaca 7948500  T
Q  501 aagctgagtgtgaagagtgatcctggagttgatggatcagtagcagctgataagacaccaagttcttctgcttttgaaaggagaccaagtttctctattg 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  7948499 aagctgagtgtgaagagtgatcctggagttgatggatcagtagcagctgataaaacaccaagttcttctgcttttgaaaggagaccaagtttctctattg 7948400  T
Q  601 ttgagagagataatcctgctttctcggctgccgataataaacctgctttctctgccttggttaacagtctc 671  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7948399 ttgagagagataatcctgctttctcggctgccgataataaacctgctttctctgccttggttaacagtctc 7948329  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 4014795 - 4014835
Alignment:
Q  2 acattgaattatgtcatttttctcaaactattatcggtgtt 42  Q
    |||||||||||||||||||||||||||  ||||||||||||    
T  4014795 acattgaattatgtcatttttctcaaatcattatcggtgtt 4014835  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 38866494 - 38866454
Alignment:
Q  1 tacattgaattatgtcatttttctcaaactattatcggtgt 41  Q
    |||||||||||||||||||||| ||||| ||||||||||||    
T  38866494 tacattgaattatgtcatttttttcaaaatattatcggtgt 38866454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 38749582 - 38749630
Alignment:
Q  1 tacattgaattatgtcatttttctcaaactattatcggtgttgatatgtc 50  Q
    |||||||||||||||||||||| ||||| |||||||||||| || |||||    
T  38749582 tacattgaattatgtcattttt-tcaaattattatcggtgtcgacatgtc 38749630  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 43208293 - 43208341
Alignment:
Q  1 tacattgaattatgtcatttttctcaaactattatcggtgttgatatgtc 50  Q
    ||||||||||||||||| |||||||||| || ||||||||||||| ||||    
T  43208293 tacattgaattatgtca-ttttctcaaattactatcggtgttgatgtgtc 43208341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 28296368 - 28296329
Alignment:
Q  1 tacattgaattatgtcatttttctcaaactattatcggtgt 41  Q
    ||||||||||||||||| |||||||||| ||||||||||||    
T  28296368 tacattgaattatgtca-ttttctcaaattattatcggtgt 28296329  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 36013817 - 36013852
Alignment:
Q  1 tacattgaattatgtcatttttctcaaactattatc 36  Q
    |||||||||||||||||||||||||||| |||||||    
T  36013817 tacattgaattatgtcatttttctcaaattattatc 36013852  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 1334916 - 1334956
Alignment:
Q  1 tacattgaattatgtcatttttctcaaactattatcggtgt 41  Q
    |||||||||||||||||||||| ||||| |||||| |||||    
T  1334916 tacattgaattatgtcatttttttcaaattattattggtgt 1334956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 38134425 - 38134464
Alignment:
Q  1 tacattgaattatgtcatttttctcaaactattatcggtgt 41  Q
    ||||||||||||||||| |||||||||| ||||||||||||    
T  38134425 tacattgaattatgtca-ttttctcaaattattatcggtgt 38134464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 7803438 - 7803484
Alignment:
Q  4 attgaattatgtcatttttctcaaactattatcggtgttgatatgtct 51  Q
    ||||||||||||||| ||| |||||||||||||||||||| |||||||    
T  7803438 attgaattatgtcatcttt-tcaaactattatcggtgttggtatgtct 7803484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 18571012 - 18570970
Alignment:
Q  1 tacattgaattatgtcatttttctcaaactattatcggtgttga 44  Q
    ||||||||||||||||||||| |||||| |||||||||||||||    
T  18571012 tacattgaattatgtcatttt-ctcaaattattatcggtgttga 18570970  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 40682022 - 40681983
Alignment:
Q  1 tacattgaattatgtcatttttctcaaactattatcggtgt 41  Q
    ||||||||||||||||| |||||||||| ||||||||||||    
T  40682022 tacattgaattatgtca-ttttctcaaattattatcggtgt 40681983  T

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Target: chr8 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 10002182 - 10002222
Alignment:
Q  1 tacattgaattatgtcatttttctcaaactattatcggtgt 41  Q
    |||||| ||||||||||||||| ||||| ||||||||||||    
T  10002182 tacattaaattatgtcatttttttcaaattattatcggtgt 10002222  T

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Target: chr4 (Bit Score: 29; Significance: 0.000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 5654610 - 5654661
Alignment:
Q  1 tacattgaattatgtcatttttctcaaactattatcggtgttgatatgtctgt 53  Q
    ||||||||||||||||| |||||||||| ||||||| |||| || ||||||||    
T  5654610 tacattgaattatgtca-ttttctcaaattattatcagtgtcgacatgtctgt 5654661  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 18513260 - 18513299
Alignment:
Q  1 tacattgaattatgtcatttttctcaaactattatcggtgt 41  Q
    ||||||||||||||||| |||||||||| ||||||||||||    
T  18513260 tacattgaattatgtca-ttttctcaaattattatcggtgt 18513299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 44796981 - 44797032
Alignment:
Q  1 tacattgaattatgtcatttttctcaaactattatcggtgttgatatgtctgt 53  Q
    ||||||||||||||| | |||||||||| |||| |||||||||| ||||||||    
T  44796981 tacattgaattatgtta-ttttctcaaattattgtcggtgttgacatgtctgt 44797032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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