View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11352_low_3 (Length: 321)
Name: NF11352_low_3
Description: NF11352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11352_low_3 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 21 - 269
Target Start/End: Original strand, 35232417 - 35232665
Alignment:
| Q |
21 |
ttacctaccagagaagctttggggaagagagacatgcttttagatcaacatcagaaatcttatcttgtaactaatactaaacatgtacactgtaccacat |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
35232417 |
ttacctaccagagaagctttggggaagagagacatgcttttagatcaaaatccgcaatcttatcttgtaactgatactaaacatgtacactgtaccacat |
35232516 |
T |
|
| Q |
121 |
aggaacaagttgtacaaccgcatttacaaaataggactgcggtttgatgaatatgaatatacttatatacaacaacctttgaaatcaaagtttttaataa |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
35232517 |
aggaacaagttgtacaaccgcatttacaaaataggactgcggtctgatgaatataaatgtacttatatacaaaaacctttgaaatcaaagtttttaataa |
35232616 |
T |
|
| Q |
221 |
tgtgataacatgtgactgaaaatattaataatggcaatagatcaaaatg |
269 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
35232617 |
tgtgataacatgtgactgaaaattttaataatggcaatagatcaaaatg |
35232665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 267 - 321
Target Start/End: Original strand, 29284955 - 29285009
Alignment:
| Q |
267 |
atgccaagaaagcaactggtgtgaagagaagcaagcctattattacttcctatcc |
321 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29284955 |
atgccaagaaagcaactggtgtgaagagaagcaagcctattattacttcctatcc |
29285009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 20 - 181
Target Start/End: Original strand, 29283596 - 29283754
Alignment:
| Q |
20 |
attacctaccagagaagctttggggaagagagacatgcttttagatcaacatcagaaatcttatcttgtaactaatactaaacatgtacactgtaccaca |
119 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||| || || ||||| ||| ||| ||| | |||||||||| |||||||||||||| |||||| |||| |
|
|
| T |
29283596 |
attacttactagagaagctttggggaagagagaagtgattctagat-aacttcaacaatat-atcttgtaacagatactaaacatgtagactgtagcaca |
29283693 |
T |
|
| Q |
120 |
taggaacaagttgtacaaccgcatttacaaaataggactgcggtttgatgaatatgaatata |
181 |
Q |
| |
|
||||| ||||||||||||| || ||||||||| |||||| ||| |||||||||| |||||| |
|
|
| T |
29283694 |
taggagcaagttgtacaactgcttttacaaaa-cggactggggtctgatgaatataaatata |
29283754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 267 - 321
Target Start/End: Original strand, 35232852 - 35232906
Alignment:
| Q |
267 |
atgccaagaaagcaactggtgtgaagagaagcaagcctattattacttcctatcc |
321 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35232852 |
atgcaaagaaagcagctggtgtgaagagaagcaagcctattattacttcctatcc |
35232906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 74 - 152
Target Start/End: Original strand, 35235254 - 35235332
Alignment:
| Q |
74 |
gaaatcttatcttgtaactaatactaaacatgtacactgtaccacataggaacaagttgtacaaccgcatttacaaaat |
152 |
Q |
| |
|
||||||||||||| ||||| || |||| ||||||||||||| |||||| |||||||||||| ||| ||||||||||||| |
|
|
| T |
35235254 |
gaaatcttatcttataactgatgctaagcatgtacactgtagcacataagaacaagttgtataactgcatttacaaaat |
35235332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 74 - 152
Target Start/End: Original strand, 29286854 - 29286933
Alignment:
| Q |
74 |
gaaatcttatcttg-taactaatactaaacatgtacactgtaccacataggaacaagttgtacaaccgcatttacaaaat |
152 |
Q |
| |
|
||||||||||||| ||||| || |||| ||||||||||||| |||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
29286854 |
gaaatcttatctttataactgatgctaagcatgtacactgtagcacataggaacaagttctacaactgcatttacaaaat |
29286933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 267 - 321
Target Start/End: Original strand, 26000001 - 26000055
Alignment:
| Q |
267 |
atgccaagaaagcaactggtgtgaagagaagcaagcctattattacttcctatcc |
321 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||||| ||||||||||| ||||| |
|
|
| T |
26000001 |
atgccaagaaagctactggtgtgaagagtagcaagcccattattacttcatatcc |
26000055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 241
Target Start/End: Original strand, 25999768 - 25999814
Alignment:
| Q |
196 |
cctttgaaatcaaagt-ttttaataatgtgataacatgtgactgaaa |
241 |
Q |
| |
|
|||||||||||||| | |||||||||||||| ||||||||||||||| |
|
|
| T |
25999768 |
cctttgaaatcaaactcttttaataatgtgacaacatgtgactgaaa |
25999814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University