View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11353_high_11 (Length: 320)
Name: NF11353_high_11
Description: NF11353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11353_high_11 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 20 - 285
Target Start/End: Original strand, 36657764 - 36658029
Alignment:
| Q |
20 |
gcaacaacatcatttcattaggtggattccatgtaagaggattaattgccatctaggttaagtttttatcacttagcttaaacatgttacttttaagaaa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36657764 |
gcaacaacatcatttcattaggtggattacatgtaagaggattaattgccatctaggttaagtttttatcacttagcttaaacatgttacttttaagaaa |
36657863 |
T |
|
| Q |
120 |
actggtgagtgaatactcaacggtgacactagcacaatgttaggatatactgtatcatatattcatcttatatcatatcctattatgtcctataatgtta |
219 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
36657864 |
accggtgagtgaatactcaacggtgacactagcacaacgttaggatatactgtatcctatattcatcctatatcatatcctattatgtcctataatgtta |
36657963 |
T |
|
| Q |
220 |
ggaacaccatgcctgaatcctactatgtccaaaggatttgttataactagtgggaatcaaagatat |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36657964 |
ggaacaccatgcctgaatcctactatgtccaaaggatttgttataactagtgggaatcaaagatat |
36658029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 49 - 129
Target Start/End: Original strand, 36668245 - 36668325
Alignment:
| Q |
49 |
catgtaagaggattaattgccatctaggttaagtttttatcacttagcttaaacatgttacttttaagaaaactggtgagt |
129 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
36668245 |
catgtaacatgattaattgccatctaggttaagtttgtatcacttagctaaaacatgttacttttaagaaaactagtgagt |
36668325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University