View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11353_high_13 (Length: 272)

Name: NF11353_high_13
Description: NF11353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11353_high_13
NF11353_high_13
[»] chr4 (3 HSPs)
chr4 (161-263)||(31841464-31841558)
chr4 (78-160)||(31841496-31841577)
chr4 (1-84)||(31841368-31841458)


Alignment Details
Target: chr4 (Bit Score: 62; Significance: 7e-27; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 161 - 263
Target Start/End: Original strand, 31841464 - 31841558
Alignment:
Q  161 aataaaaagtttaagttgctcctttggcacaaatcacatgtggttgttgccttgttggcatagaaatcaacagataaaatatgtgtcgtgcgtttcttct 260  Q
    |||||||||||||||||||||||||||||||||||||||||||        ||||| |||||||||||||| |||||||||||||| |||||||||||||    
T  31841464 aataaaaagtttaagttgctcctttggcacaaatcacatgtgg--------ttgttagcatagaaatcaacggataaaatatgtgtggtgcgtttcttct 31841555  T

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Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 78 - 160
Target Start/End: Original strand, 31841496 - 31841577
Alignment:
Q  78 atcacatgtggttgttggcatataaatcaacggataaaatatgtgtcgtgagtttcttctctcaaatattttgtaaagttaag 160  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||| ||| |||||||||||| ||||||| |||||||||||    
T  31841496 atcacatgtggttgttagcatagaaatcaacggataaaatatgtgtggtgcgtttcttctctc-aatatttcgtaaagttaag 31841577  T

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Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 31841368 - 31841458
Alignment:
Q  1 ataaattattattcttcatgtctcatgtgtgtttcaagagcagt-------attacgaaaatacacaacaaaaaatgcaagaatatcacat 84  Q
    ||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||| ||| |||||||||||||||||||    
T  31841368 ataaattattattcttcatgtctcatgtgtgtttcaagagcagtgttattccttacgaaaatacacagcaagaaatgcaagaatatcacat 31841458  T

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