View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11353_high_16 (Length: 256)
Name: NF11353_high_16
Description: NF11353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11353_high_16 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 16 - 256
Target Start/End: Original strand, 37173192 - 37173432
Alignment:
| Q |
16 |
cacagaaccccaatctttagtaccaaagtttgcttgctttaatcttctcctcaccgacaagcctcccacgtcgtgttttttcatttcagatacgcttttc |
115 |
Q |
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| T |
37173192 |
cacagaaccccaatctttagtaccaaagtttgcttgctttaatcttctcctcaccgacaagcctcccacgtcgtgttttttcatttcagatacgcttttc |
37173291 |
T |
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| Q |
116 |
agtatcgaaatacaaaggagaagcatcaatactgtgtcttcttcgggcaatacttcgacaaccaatagcctccaatttagtagagctgttgcttttccat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37173292 |
agtatcgaaatacaaaggagaagcatcaatactgtgtcttcttcgggcaatacttcgacaaccaatagcctccaatttagtagagctgttgcttttccat |
37173391 |
T |
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| Q |
216 |
ccgggttatcttctgtgaaacgaactagtgttagaaaaccc |
256 |
Q |
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| T |
37173392 |
ccgggttatcttctgtgaaacgaactagtgttagaaaaccc |
37173432 |
T |
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