View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11353_high_3 (Length: 664)
Name: NF11353_high_3
Description: NF11353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11353_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 283 - 644
Target Start/End: Original strand, 33080743 - 33081112
Alignment:
| Q |
283 |
aaatcaccaatccaagtagtataaatagctttctattgcttaatcattgtattgtattatgaataacttggacagtgnnnnnnntcagtgagcagttaat |
382 |
Q |
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| T |
33080743 |
aaatcaccaatccaagtagtataaatagctttctattgcttaatcattgtattgtattatgaataacttggacagtgaaaaaa-tcagtgagcagttaat |
33080841 |
T |
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| Q |
383 |
tgtataatcatgcagacacagtccagatgcccggcacggcatcgcctacaatgtagtaagctgctgcaccaagagaatccacactagatgtgtcaaacca |
482 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33080842 |
tgtataatcatgcagacacagtccagatgcccggcacagcatcacctacaatgtagtaagctgctgcaccaagagaatccacactagatgtgtcaaacca |
33080941 |
T |
|
| Q |
483 |
tatatcagaagtacctgctttaatcatcacattcttaactaccccaagtataataaataaactcacaatgcacta---------gctacagacatggcca |
573 |
Q |
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| T |
33080942 |
tatatcagaagtacctgctttaatcatcacattcttaactaccccaagtataataaataaactcacaatgcactattagactttgctgcagacatggcca |
33081041 |
T |
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| Q |
574 |
gattaattaactacatatataaactacaacaccgacaagtaaaacatcattcccaccatcacacacaaaca |
644 |
Q |
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| T |
33081042 |
gattaattaactacatatataaactacaacaccgacaagtaaaacatcattcccaccatcacacacaaaca |
33081112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 15 - 259
Target Start/End: Original strand, 33080496 - 33080745
Alignment:
| Q |
15 |
acatcacttgtgataaagatgtcttatgatgaaaaggattctgcaccgcagaataagacttaatatgaacatgaatatg----atttatggtgtgaaaca |
110 |
Q |
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| T |
33080496 |
acatcacttgtgataaaaatgtcttatgatgaaaaggattctgcaccgcagaataagacttgatatgcacatgcatatggatgatttatggagtgaaaca |
33080595 |
T |
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| Q |
111 |
ctaacactaaatccgcaataaaaaatattaccaaaggataactcacatcttcaagtatgttgtaacaagtcataac--tgcgtaagttaaccaacttagt |
208 |
Q |
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| T |
33080596 |
ttaacactaaatccgcaataaaaaatattaccaaaggataactcacatcttcaagtgtgttgtaacaagtcataacattgcataagttaa-caacttaga |
33080694 |
T |
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| Q |
209 |
gtcacaacaatacttacaatcacctacatatagaaattgtggctgaacaaa |
259 |
Q |
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| T |
33080695 |
gtcacaaaaatacttacaatcacctacatatagaaattgtagctgaacaaa |
33080745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 447 - 511
Target Start/End: Complemental strand, 6189784 - 6189720
Alignment:
| Q |
447 |
tgcaccaagagaatccacactagatgtgtcaaaccatatatcagaagtacctgctttaatcatca |
511 |
Q |
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| T |
6189784 |
tgcaccaagagaatctaaactagatgtgtcaagccatatatcagaaatatctgctttaatcatca |
6189720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 422 - 513
Target Start/End: Original strand, 7690353 - 7690441
Alignment:
| Q |
422 |
catcgcctacaatgtagtaagctgctgcaccaagagaatccacactagatgtgtcaaaccatatatcagaagtacctgctttaatcatcaca |
513 |
Q |
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| T |
7690353 |
catcacctacaatgcagtaagctg---caccaagagaatctaaactagatgtgtcaagccatatatcataaatatatgctttaatcatcaca |
7690441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 465 - 522
Target Start/End: Original strand, 29970778 - 29970835
Alignment:
| Q |
465 |
actagatgtgtcaaaccatatatcagaagtacctgctttaatcatcacattcttaact |
522 |
Q |
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| T |
29970778 |
actagatgtgtcaaactatatatcagaagtacctgctttattcatcattttcttaact |
29970835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 467 - 513
Target Start/End: Complemental strand, 16433202 - 16433156
Alignment:
| Q |
467 |
tagatgtgtcaaaccatatatcagaagtacctgctttaatcatcaca |
513 |
Q |
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| T |
16433202 |
tagatgtgtcaagccatatatcagaaatatctgctttaatcatcaca |
16433156 |
T |
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