View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11353_high_4 (Length: 568)
Name: NF11353_high_4
Description: NF11353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11353_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 509; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 16 - 559
Target Start/End: Original strand, 26568109 - 26568659
Alignment:
| Q |
16 |
tcagacaccggacacgagttcaatatgaattgtctgtgctgcatagttaatgctttttccgatgtaataattttgtaatggttaaattaagaggcataat |
115 |
Q |
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| T |
26568109 |
tcagacaccggacacgagttcaatatgaattgtctgtgctgcatagttaatgctttttccgatgtaataattttgtaatggttaaattaagaggcataat |
26568208 |
T |
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| Q |
116 |
ttcatcttctatgcagcctacattaattatctggggagaacatgatcaagtgttccctttggagcttggccacagattgaaaaggttaatattttaataa |
215 |
Q |
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| T |
26568209 |
ttcatcttctatgcagcctacattaattatctggggagaacatgatcaagtgttccctttggagcttggccacagattgaaaaggttaatattttaataa |
26568308 |
T |
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| Q |
216 |
caatctcactgtacttgttttgttaattgtggagtccttgttaaat-------cttgaactcattggatttgaatcacaggcatttaggggacaatgctc |
308 |
Q |
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| T |
26568309 |
caatctcattgtacttgttttgttaattgtggagtcctttttaaattttgaatcttgaactcattggatttgaatcacaggcatttaggggacaatgctc |
26568408 |
T |
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| Q |
309 |
aaatagtggtgatcaagaatgcagggcatgcattttgtgtggaaaaggctaaggagttctacaataccttgaagtcctttctagtcgattcacatagctg |
408 |
Q |
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| T |
26568409 |
aaatagtggtgatcaagaatgcagggcatgcattttgtgtggaaaaggctaaggagttctacaataccttgaagtcctttctagtcgattcacatagctg |
26568508 |
T |
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| Q |
409 |
agaaataatcttccgatcaagtcctagttcaaatgccaaaagagaaaggaaaacaactatagcgcgacttaaggttctttgttttcggtccctttcaagg |
508 |
Q |
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| T |
26568509 |
agaaataattttctgatcaagtcctagttcaaatgccaaaagagaaaggaaaacaactatagcgcgacttaaggttctttgttttcggtccctttcaagg |
26568608 |
T |
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| Q |
509 |
ctcatgtctgtttcttatttttgttcctagatcctctcgatgcattcatct |
559 |
Q |
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| T |
26568609 |
ctcatgtctgtttcttatttttgttcctagatcctctcgatgcattcatct |
26568659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 286 - 342
Target Start/End: Original strand, 1676623 - 1676679
Alignment:
| Q |
286 |
caggcatttaggggacaatgctcaaatagtggtgatcaagaatgcagggcatgcatt |
342 |
Q |
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| T |
1676623 |
caggcatataggtgaaaatgctcaaatggtggtcatcaagaatgcagggcatgcatt |
1676679 |
T |
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