View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11353_high_5 (Length: 482)
Name: NF11353_high_5
Description: NF11353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11353_high_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 1 - 465
Target Start/End: Complemental strand, 47712778 - 47712314
Alignment:
| Q |
1 |
tttcctagggaggagtatgaaggtgtggaggaggctcattatgcttatagggttcgtgatcgtttgaggaaggatgtgttggtgccgttgaggaaggttt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
47712778 |
tttcctagggaggagtatgaaggtgtggaggaggcgcattatgcttatagggttcgtgatcgtttgaggaaggatgtgttggtgccattgaggaaggttt |
47712679 |
T |
|
| Q |
101 |
tggagttgcctgaggtgtttattggggctaatcgatggaaattgattccttacaacagggttgcgtctgtggcgatggagttttataaagagaagttttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47712678 |
tggagttgcctgaggtgtttattggggctaatcgatggaaattgattccttacaacagggttgcgtctgtggcgatggagttttataaagagaagttttt |
47712579 |
T |
|
| Q |
201 |
gaagcatgataaaaagaggtttgagaagtatttggaggatgtgaaagtggggaagactacgatcgctgctggtgctttgcttcctcatgacattattcgg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
47712578 |
gaagcatgataaaaagaggtttgagaagtatttggaggatgtgaaagtggggaagactacgatcgctgctggtgctttgcttcctcatgatattattcgg |
47712479 |
T |
|
| Q |
301 |
tcgttgggggatggagatggtggagaggtggcggagttacagtggacgagaatggtggatgatttgctcaagaaagggaagatgaggaattgtcttgctg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47712478 |
tcgttgggggatggagatggtggagaggtggcggagttacagtggacgagaatggtggatgatttgctcaagaaagggaagatgaggaattgtcttgctg |
47712379 |
T |
|
| Q |
401 |
tgtgtgatgtttctgggagtatgactgggatccctatggatgtgtgtgtggcattgggattgttg |
465 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47712378 |
tgtgtgatgtttctgggagtatgactgggatccctatggatgtgtgtgtggcattgggattgttg |
47712314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 4 - 465
Target Start/End: Complemental strand, 19795876 - 19795415
Alignment:
| Q |
4 |
cctagggaggagtatgaaggtgtggaggaggctcattatgcttatagggttcgtgatcgtttgaggaaggatgtgttggtgccgttgaggaaggttttgg |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
19795876 |
cctagggaggagtatgaaggtgtggaggaggcacattatgcttatagggttcgtgatcggttgaggaaagatgtgttggtgccgttgaggaaggtgttgg |
19795777 |
T |
|
| Q |
104 |
agttgcctgaggtgtttattggggctaatcgatggaaattgattccttacaacagggttgcgtctgtggcgatggagttttataaagagaagtttttgaa |
203 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||| |||||||| ||||| |||||||| |||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
19795776 |
agttgcctgaggtgtttattggtgctaatcaatggggtttgattccatacaatagggttgcttctgtggcgatgaagttttataaggagaagtttttgaa |
19795677 |
T |
|
| Q |
204 |
gcatgataaaaagaggtttgagaagtatttggaggatgtgaaagtggggaagactacgatcgctgctggtgctttgcttcctcatgacattattcggtcg |
303 |
Q |
| |
|
||||||||| |||||||||||||||| |||||||||||||| | ||||||||||| || ||||||||||||||||||||||| || ||||| ||| |
|
|
| T |
19795676 |
gcatgataaggagaggtttgagaagtacttggaggatgtgaaggcagggaagactactattgctgctggtgctttgcttcctcacgagattatagagtct |
19795577 |
T |
|
| Q |
304 |
ttgggggatggagatggtggagaggtggcggagttacagtggacgagaatggtggatgatttgctcaagaaagggaagatgaggaattgtcttgctgtgt |
403 |
Q |
| |
|
|||| |||| |||||||||||| ||||| ||||| ||||||| |||||| || ||||||||||||||||| || || |||||||||||||||||||||| |
|
|
| T |
19795576 |
ttggatgatgaagatggtggagaagtggctgagttgcagtggaagagaattgttgatgatttgctcaagaagggaaaaatgaggaattgtcttgctgtgt |
19795477 |
T |
|
| Q |
404 |
gtgatgtttctgggagtatgactgggatccctatggatgtgtgtgtggcattgggattgttg |
465 |
Q |
| |
|
||||||| |||||||||||| ||||| ||||||||| ||||||||||||||||| |||||| |
|
|
| T |
19795476 |
gtgatgtgtctgggagtatgcatgggacccctatggaggtgtgtgtggcattggggttgttg |
19795415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 8 - 465
Target Start/End: Original strand, 19785715 - 19786172
Alignment:
| Q |
8 |
gggaggagtatgaaggtgtggaggaggctcattatgcttatagggttcgtgatcgtttgaggaaggatgtgttggtgccgttgaggaaggttttggagtt |
107 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
|
|
| T |
19785715 |
gggaggaatatgaaggtgtggaggaggcacattatgcttatagggttcgtgatcgtttgaggaaagatgtgttggtgccgttgaggaaggtgttggagtt |
19785814 |
T |
|
| Q |
108 |
gcctgaggtgtttattggggctaatcgatggaaattgattccttacaacagggttgcgtctgtggcgatggagttttataaagagaagtttttgaagcat |
207 |
Q |
| |
|
|||||||||||||||||| ||||||| |||| |||||||||||||| || ||||| |||||||||||| |||||||||| || ||||||||||||||| |
|
|
| T |
19785815 |
gcctgaggtgtttattggtgctaatcaatggggtttgattccttacaatagagttgcttctgtggcgatgaagttttataaggaaaagtttttgaagcat |
19785914 |
T |
|
| Q |
208 |
gataaaaagaggtttgagaagtatttggaggatgtgaaagtggggaagactacgatcgctgctggtgctttgcttcctcatgacattattcggtcgttgg |
307 |
Q |
| |
|
||||| |||||||||||||||| ||| |||||||||| | || |||||||| || ||||||||||||||||||||||| | ||||| ||| |||| |
|
|
| T |
19785915 |
gataaggagaggtttgagaagtacttgaaggatgtgaaggcaggaaagactactattgctgctggtgctttgcttcctcaccagattatagagtctttgg |
19786014 |
T |
|
| Q |
308 |
gggatggagatggtggagaggtggcggagttacagtggacgagaatggtggatgatttgctcaagaaagggaagatgaggaattgtcttgctgtgtgtga |
407 |
Q |
| |
|
||||||||||||||||||| || || ||||| ||||||| |||||| || |||||||||||||||||||| ||||||| ||||||||||| |||||||| |
|
|
| T |
19786015 |
gggatggagatggtggagaagttgctgagttgcagtggaagagaattgttgatgatttgctcaagaaaggaaagatgaaaaattgtcttgcagtgtgtga |
19786114 |
T |
|
| Q |
408 |
tgtttctgggagtatgactgggatccctatggatgtgtgtgtggcattgggattgttg |
465 |
Q |
| |
|
|||||||||||| ||| |||||| |||||||| |||| | |||||||||| |||||| |
|
|
| T |
19786115 |
tgtttctgggagcatgtctgggactcctatggaggtgtctttggcattggggttgttg |
19786172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 8 - 465
Target Start/End: Complemental strand, 15835179 - 15834722
Alignment:
| Q |
8 |
gggaggagtatgaaggtgtggaggaggctcattatgcttatagggttcgtgatcgtttgaggaaggatgtgttggtgccgttgaggaaggttttggagtt |
107 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| | || |
|
|
| T |
15835179 |
gggaggaatatgaaggtgtggaggaggcgcattatgcttatagggttcgtgatcgtttgaggaaagatgtgttggtgccgttgaggaaggcgttgcaatt |
15835080 |
T |
|
| Q |
108 |
gcctgaggtgtttattggggctaatcgatggaaattgattccttacaacagggttgcgtctgtggcgatggagttttataaagagaagtttttgaagcat |
207 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||||||||||| || |||||||| |||||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
15835079 |
gcctgaggtgtttattggggctaatcaatggggtttgattccttataatagggttgcttctgtggccatggagttttataaggagaagtttttgaagcat |
15834980 |
T |
|
| Q |
208 |
gataaaaagaggtttgagaagtatttggaggatgtgaaagtggggaagactacgatcgctgctggtgctttgcttcctcatgacattattcggtcgttgg |
307 |
Q |
| |
|
||| | |||||||||||||||| ||| |||||||||| | ||||||||||| || |||||||||||||||||||||||| | ||||| ||| || |
|
|
| T |
15834979 |
gatgaggagaggtttgagaagtacttgcaggatgtgaaggcagggaagactactatggctgctggtgctttgcttcctcataagattataaagtcttttt |
15834880 |
T |
|
| Q |
308 |
gggatggagatggtggagaggtggcggagttacagtggacgagaatggtggatgatttgctcaagaaagggaagatgaggaattgtcttgctgtgtgtga |
407 |
Q |
| |
|
| ||||| |||||||||| |||| ||||| ||||||| |||||| || |||||||||||||||||||| ||||||| ||||||||||| |||| ||| |
|
|
| T |
15834879 |
tgaatggatatggtggagaagtggatgagttgcagtggaagagaattgttgatgatttgctcaagaaaggaaagatgaaaaattgtcttgcagtgtctga |
15834780 |
T |
|
| Q |
408 |
tgtttctgggagtatgactgggatccctatggatgtgtgtgtggcattgggattgttg |
465 |
Q |
| |
|
||| |||| ||||||| ||||| ||||||||| |||| |||||||||||| |||||| |
|
|
| T |
15834779 |
tgtgtctgcgagtatgtatgggacccctatggaggtgtctgtggcattggggttgttg |
15834722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University