View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11353_high_6 (Length: 461)
Name: NF11353_high_6
Description: NF11353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11353_high_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 1 - 442
Target Start/End: Original strand, 2305428 - 2305866
Alignment:
| Q |
1 |
tacatagaccacatggtagcaaaagaacaaaataaacaatagatgtgtctagcatgctctttacatttgtaaagatgcgttaatatttatacaagagtgg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
2305428 |
tacatagaccacatggtagcaaaagaacaaaataaacaatagatgtgtctagcatgctctttatatttgtaaagatgcgttaatatttatacaagagtgg |
2305527 |
T |
|
| Q |
101 |
cactaaatgttgctttctc-ttaataggatttaagctattcttattggatactcatcaaatatttttcatttgtcgaatatggatggattgtctcatgag |
199 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
2305528 |
cactaaatgttgctttctccttaataggatttaagctattctcattggatactcatcaaatatttttcatttgtcgaatatgg----attgtctcatgag |
2305623 |
T |
|
| Q |
200 |
gctgcagttaaaggagggcaatgcttagtttcttgaaagagatgcatgtgatccgatttaatttgatagtctttatcttcttcattttcagcatcccaaa |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2305624 |
gctgcagttaaaggagggcaatgcttagtttcttgaaagagatgcatgtgatccgatttaatttgatagtctttatcttcttcattttcagcatcccaaa |
2305723 |
T |
|
| Q |
300 |
ggaatttggcatatgaagctaggacatagctgcataatattaagtaaatataatagttagttaagtatcaacaagattaattggttgtttcaaataaaat |
399 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2305724 |
ggaatttggcatatgaagctaggacataactgcataatattaagtaaatataatagttagttaagtatcaacaagattaattggttgtttcaaataaaat |
2305823 |
T |
|
| Q |
400 |
catcaaagattatgccaaaatttaactcattatataacactta |
442 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
2305824 |
catcaaagattatgtcaaaatttaactcattatataacactta |
2305866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 267 - 331
Target Start/End: Complemental strand, 44694294 - 44694230
Alignment:
| Q |
267 |
agtctttatcttcttcattttcagcatcccaaaggaatttggcatatgaagctaggacatagctg |
331 |
Q |
| |
|
|||| |||||||| || | |||||||||||| |||||||| ||||||||||| | |||||||||| |
|
|
| T |
44694294 |
agtcattatcttcatcttcttcagcatcccataggaattttgcatatgaagccaagacatagctg |
44694230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University