View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11353_high_7 (Length: 437)
Name: NF11353_high_7
Description: NF11353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11353_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 17 - 418
Target Start/End: Complemental strand, 31841395 - 31840994
Alignment:
| Q |
17 |
acatcagacatgaagaataataatttatttagagctaaaaaagctaccaataccaaaggaaataatatttccccactatttattgtataatgaatcttgc |
116 |
Q |
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| T |
31841395 |
acatgagacatgaagaataataatttatttaggactaaaaaagctaccaataccaaaggaaataatatttccccactatttattgtataatgaatcttgc |
31841296 |
T |
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| Q |
117 |
ttcatgatcggttttccttattgcaaataaattattgaaaaagataagtttttgatggagtaagtgagatttgtaagccattttgattgatacgatacaa |
216 |
Q |
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| T |
31841295 |
ttcatgatcggttttccttattgcaaataaattattgaaaaagataagtttttgatggagtaagtgagatttgtaagccattttgattgatacgatacaa |
31841196 |
T |
|
| Q |
217 |
tgtagttaaaccaataaatatttaagaaagcgaagtgctaaatttacgctagttttcccaatcatttattgaattttctttggacccaaaatcatttatt |
316 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31841195 |
tgtagttaaaccaatcaatatttaagaaagcgaagtgctaaatttacgctagttttcccaatcatttattgaattttctttggacccaaaatcatttatt |
31841096 |
T |
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| Q |
317 |
attgtattgtatttgaaaatggaaagatccataactaaaggaaacaaaaggtgccatggatatattttaccacttgataagtgtcggcaacatagtatct |
416 |
Q |
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| T |
31841095 |
actgtattgtatttgaaaatggaaagatccataactaaaggaaacaaaaggtgccatggatatattttaccacttgataagtgtcggcaacatagtatct |
31840996 |
T |
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| Q |
417 |
tg |
418 |
Q |
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|| |
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| T |
31840995 |
tg |
31840994 |
T |
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