View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11353_low_1 (Length: 1119)
Name: NF11353_low_1
Description: NF11353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11353_low_1 |
 | |
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| [»] scaffold0606 (1 HSPs) |
| | |
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Alignment Details
Target: chr5 (Bit Score: 778; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 778; E-Value: 0
Query Start/End: Original strand, 19 - 1110
Target Start/End: Original strand, 42204681 - 42205753
Alignment:
| Q |
19 |
aatgtggcagatgcagttgccattatggtcaaaatacaattagctagaaaccttcaaatctttatattgttgatgcaattgcaacttgtcaaccgaaaac |
118 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42204681 |
aatgtggcagatggagttgccattatggtcaaaatacaattag----aaaccttcaaatctttatattgttgatgcaattgcaacttgtcaaccgaaaac |
42204776 |
T |
|
| Q |
119 |
taaagatagaggtcagtaaacgtatgtttg------cggcggatgagacaaactaaaaatggaaactgattaggtaacgaccgatgaatgcaacggtgac |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
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|
| T |
42204777 |
taaagatagaggtcagtaaacgtatgtttgattgtgcggcggatgagacaaactaaaaatggaaactgattaggtgacgacggatgaatgcaacggtgac |
42204876 |
T |
|
| Q |
213 |
agtgtggtgtttcagcacggtaggggtgtggtctttacgaagaaacgaaggtgcctacaaacatgttaattgtcagcacttcaacgcgcaagttagtgta |
312 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||| | |||| |
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|
| T |
42204877 |
agtgtggtgtttcagcacggtagtggtgtggtctttacgatgaaacgaaggtgcctacaaacatgtta-------gcacttcaacgctcaagtcaatgta |
42204969 |
T |
|
| Q |
313 |
gggaacgaggttggatgtgtaaaagtgtgtggaaaatgaattgtatcttaagggtgacgcgaaatcaccattatataggaggagatactaactacttctg |
412 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||| | |
|
|
| T |
42204970 |
gggaacaaggttggatgtgtaaaagtgtgtggaaaatgaactgtatcttaagggtgacgtgaaatcacccttatataggaggagatgctaactacttccg |
42205069 |
T |
|
| Q |
413 |
taaaatgcaacgtctcataatgaagccattagaggccatgtgtacgatgcacgaagtgcaggtgcgtgattcagtgcggtggtacacaccgttgctggcg |
512 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
42205070 |
taaaatgcgacgtctcatcatgaagccattag--------------------gaagtgcaggtgcgtgattcagtgcggtggtacacactgttgctggca |
42205149 |
T |
|
| Q |
513 |
tgctcacgcaggacaccaccccttggtctgaaagattttggccacgtgtcgtcacatgattggtcttctgaccggtccaaaacataaactattttttaaa |
612 |
Q |
| |
|
|||||||||| |||||||||| ||||||| |||||||||| |||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
42205150 |
tgctcacgcatgacaccacccgttggtctaaaagattttgtccacgtgttgtcacatgattggtcttctgattggtccaaaacagaaactattttttaaa |
42205249 |
T |
|
| Q |
613 |
actttaatttcatcgagtgtttaatatttttatcacggcagaaacatatatacattaaatgcactaattaaaccctttttaacgagtttgctcatgctat |
712 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42205250 |
acttcaatttcatcgagtatttaatatttttatcaccgcagaaacaaacatacattaaatgcactaattaaaccctttttaacgagtttgctcatgctac |
42205349 |
T |
|
| Q |
713 |
ggagtaggtgatacatctccattatagaaaaatggcaatgcctgac---------aaaaaactgataaatggcaatgcttgatttgacttatttggtctt |
803 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42205350 |
ggagtaggtgatacatctccattatagaaaaatggcaatgcctgaccaaaaaaaaaaaaaaaagataaatggcaatgcttgatttgacttatttggtctt |
42205449 |
T |
|
| Q |
804 |
ttctctttgattttggcgagcaatagttgttggagaaaattgaacaataattagaaagaaacaaagactccaattgtttctaattgacaaagatttgtga |
903 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
42205450 |
ttctctttgattttggcgagcaatagttgttggagaaaattgaacaataattagaaagaaacaacgactccaattgtttctaattgacaaagatttgtga |
42205549 |
T |
|
| Q |
904 |
tattgataaggatcaagactcctaaacgtgtggattttggaagagtaacttggcagttcttcataaataattttggatggctagggagggacctatgatt |
1003 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
42205550 |
tattgataaggatcaagactcctaaacgtgtggattttggaagagtaacttggcagttcttcataaataattttggatggctagggagggatctatgatt |
42205649 |
T |
|
| Q |
1004 |
actatagcttattgattagattttcattatgtcaataaatcatgtttatggttcaatcaatttgcattattattattggtgattcaaaagtccaattgat |
1103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
42205650 |
gctatagcttattgattagattttcattatgtcaataaatcatgtttatggttcaatcaatttgc---attattattggtgattcaaaagtccaattgat |
42205746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 292 - 372
Target Start/End: Original strand, 34443302 - 34443384
Alignment:
| Q |
292 |
ttcaacgcgcaagttagtgtagggaacgaggttggatgtgtaaaagtgtgt-ggaaaatg-aattgtatcttaagggtgacgc |
372 |
Q |
| |
|
|||||||| ||||| |||||||| || || |||| |||||||||||||||| |||||||| ||||||| ||| |||||||||| |
|
|
| T |
34443302 |
ttcaacgctcaagtcagtgtaggaaatgaagttgaatgtgtaaaagtgtgtgggaaaatgaaattgtaccttgagggtgacgc |
34443384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 1e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 287 - 393
Target Start/End: Original strand, 53402502 - 53402608
Alignment:
| Q |
287 |
agcacttcaacgcgcaagttagtgtagggaacgaggttggatgtgtaaaagtgtgtggaaaatgaattgtatcttaagggtgacgcgaaatcaccattat |
386 |
Q |
| |
|
|||| |||||||| ||||| ||| ||| || |||| || |||||||||||||||||| |||||||| ||| ||| ||||||||||||||||||| |||| |
|
|
| T |
53402502 |
agcatttcaacgctcaagtcggtgcaggaaatgaggatgaatgtgtaaaagtgtgtgggaaatgaatcgtaccttgagggtgacgcgaaatcacccttat |
53402601 |
T |
|
| Q |
387 |
ataggag |
393 |
Q |
| |
|
||||||| |
|
|
| T |
53402602 |
ataggag |
53402608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 319 - 389
Target Start/End: Complemental strand, 43543342 - 43543272
Alignment:
| Q |
319 |
gaggttggatgtgtaaaagtgtgtggaaaatgaattgtatcttaagggtgacgcgaaatcaccattatata |
389 |
Q |
| |
|
||||||| ||| |||| ||||||||| |||||||||||||||| |||||||||| || ||| | ||||||| |
|
|
| T |
43543342 |
gaggttgtatgcgtaagagtgtgtgggaaatgaattgtatcttgagggtgacgcaaagtcatccttatata |
43543272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 5e-16; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 294 - 393
Target Start/End: Original strand, 17560782 - 17560882
Alignment:
| Q |
294 |
caacgcgcaagttagtgtagggaacgaggttggatgtgtaaaagtgtgtggaaaa-tgaattgtatcttaagggtgacgcgaaatcaccattatatagga |
392 |
Q |
| |
|
|||||| ||||| |||||||| || ||||||| |||||||| | ||||||||||| ||||||||| ||| |||||||||| ||||||| |||||||||| |
|
|
| T |
17560782 |
caacgctcaagtcagtgtaggaaatgaggttgaatgtgtaagaatgtgtggaaaaatgaattgtaccttgagggtgacgcagaatcacccttatatagga |
17560881 |
T |
|
| Q |
393 |
g |
393 |
Q |
| |
|
| |
|
|
| T |
17560882 |
g |
17560882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 287 - 393
Target Start/End: Original strand, 40800136 - 40800241
Alignment:
| Q |
287 |
agcacttcaacgcgcaagttagtgtagggaacgaggttggatgtgtaaaagtgtgtggaaaatgaattgtatcttaagggtgacgcgaaatcaccattat |
386 |
Q |
| |
|
|||||||||||| ||| ||||||||| || || |||| |||||||||||||| | |||||||| ||| ||| ||||||||||||||||||| |||| |
|
|
| T |
40800136 |
agcacttcaacgttcaaattagtgtaga-aatgatgttgattgtgtaaaagtgtggaggaaatgaatcgtaccttgagggtgacgcgaaatcacccttat |
40800234 |
T |
|
| Q |
387 |
ataggag |
393 |
Q |
| |
|
||||||| |
|
|
| T |
40800235 |
ataggag |
40800241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 295 - 357
Target Start/End: Complemental strand, 13779170 - 13779108
Alignment:
| Q |
295 |
aacgcgcaagttagtgtagggaacgaggttggatgtgtaaaagtgtgtggaaaatgaattgta |
357 |
Q |
| |
|
||||| |||||||||||| | || ||||||| |||||||||||| ||||| |||||||||||| |
|
|
| T |
13779170 |
aacgctcaagttagtgtaagaaatgaggttgaatgtgtaaaagtttgtgggaaatgaattgta |
13779108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 478 - 552
Target Start/End: Original strand, 33189679 - 33189753
Alignment:
| Q |
478 |
gtgattcagtgcggtggtacacaccgttgctggcgtgctcacgcaggacaccaccccttggtctgaaagattttg |
552 |
Q |
| |
|
|||||||| ||||||||||||||| |||| || ||||||||||||||||| | || |||||||||| ||||||| |
|
|
| T |
33189679 |
gtgattcattgcggtggtacacactgttgttgtcgtgctcacgcaggacatcgccttttggtctgaaggattttg |
33189753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 308 - 393
Target Start/End: Original strand, 11714205 - 11714290
Alignment:
| Q |
308 |
gtgtagggaacgaggttggatgtgtaaaagtgtgtggaaaatgaattgtatcttaagggtgacgcgaaatcaccattatataggag |
393 |
Q |
| |
|
||||||| || ||||||| |||||||||| ||| ||| |||||||||||| ||| ||||||||| | | ||||| ||||||||||| |
|
|
| T |
11714205 |
gtgtaggaaatgaggttgaatgtgtaaaaatgtatgggaaatgaattgtaccttgagggtgacgtggagtcacccttatataggag |
11714290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 287 - 387
Target Start/End: Complemental strand, 12163766 - 12163666
Alignment:
| Q |
287 |
agcacttcaacgcgcaagttagtgtagggaacgaggttggatgtgtaaaagtgtgtggaaaatgaattgtatcttaagggtgacgcgaaatcaccattat |
386 |
Q |
| |
|
|||||| |||||| || ||||||||||| || | ||||| |||||||||| | ||||| |||||||| ||| ||| ||||||||||| |||| || |||| |
|
|
| T |
12163766 |
agcactccaacgctcatgttagtgtaggaaatggggttgaatgtgtaaaattatgtgggaaatgaatcgtaacttgagggtgacgcggaatcgcccttat |
12163667 |
T |
|
| Q |
387 |
a |
387 |
Q |
| |
|
| |
|
|
| T |
12163666 |
a |
12163666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 301 - 393
Target Start/End: Complemental strand, 5528441 - 5528349
Alignment:
| Q |
301 |
caagttagtgtagggaacgaggttggatgtgtaaaagtgtgtggaaaatgaattgtatcttaagggtgacgcgaaatcaccattatataggag |
393 |
Q |
| |
|
||||| || ||||| || ||||||| ||||||||||||||||| |||| ||| ||| ||| |||||||||| ||||||| ||||||||||| |
|
|
| T |
5528441 |
caagtcagagtaggaaatgaggttgaatgtgtaaaagtgtgtgagaaataaatcgtaccttgagggtgacgcagaatcacccttatataggag |
5528349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 320 - 371
Target Start/End: Original strand, 27158317 - 27158368
Alignment:
| Q |
320 |
aggttggatgtgtaaaagtgtgtggaaaatgaattgtatcttaagggtgacg |
371 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||||||| ||| ||||||||| |
|
|
| T |
27158317 |
aggttgaatgtgtaaaagtgtgtgggaaatgaattgtaccttgagggtgacg |
27158368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 307 - 389
Target Start/End: Original strand, 39003186 - 39003268
Alignment:
| Q |
307 |
agtgtagggaacgaggttggatgtgtaaaagtgtgtggaaaatgaattgtatcttaagggtgacgcgaaatcaccattatata |
389 |
Q |
| |
|
|||||||| || || |||| |||||||||||||||||| |||| ||| ||| ||| ||||||| ||| ||||||| ||||||| |
|
|
| T |
39003186 |
agtgtaggaaatgaagttgaatgtgtaaaagtgtgtgggaaattaatcgtaccttgagggtgatgcggaatcacccttatata |
39003268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0606 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: scaffold0606
Description:
Target: scaffold0606; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 400
Target Start/End: Complemental strand, 2050 - 1958
Alignment:
| Q |
307 |
agtgtagggaacgaggttggatgtgtaaaagtgtgtggaaaatgaattgtatcttaagggtgacgcgaaatcaccattatataggaggagatac |
400 |
Q |
| |
|
|||||||| || || |||||| | ||||||||||||||||| ||||| ||| ||| ||||||| || ||||||| ||||||||||| |||||| |
|
|
| T |
2050 |
agtgtaggaaatgacgttggaagagtaaaagtgtgtggaaa-tgaatcgtaccttgagggtgatgcagaatcacccttatataggagaagatac |
1958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 389
Target Start/End: Complemental strand, 30678488 - 30678426
Alignment:
| Q |
327 |
atgtgtaaaagtgtgtggaaaatgaattgtatcttaagggtgacgcgaaatcaccattatata |
389 |
Q |
| |
|
|||||||||||| |||||||||||||| || ||| ||||||| ||| ||||||| ||||||| |
|
|
| T |
30678488 |
atgtgtaaaagtacgtggaaaatgaattctaccttgagggtgatgcggaatcacccttatata |
30678426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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