View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11353_low_11 (Length: 371)
Name: NF11353_low_11
Description: NF11353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11353_low_11 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 17 - 371
Target Start/End: Complemental strand, 31955258 - 31954904
Alignment:
| Q |
17 |
acaattaattgaccaacacatggcataagcatgcttattttgagtgtctcaagtaaggcaatcattgttaatttccacacaatgctgaacatggattctc |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31955258 |
acaattaattgaccaacacatggcataagcatgcttattttgaatgtctcaagtaaggcaatcattgttaatttccacacaatgctgaacatggattctc |
31955159 |
T |
|
| Q |
117 |
tgcctaatggatgtcctgtgtactccaagagataagatagagagacttgttgaacatgttaacaacacnnnnnnnngcatcccatacgctgttctaagtt |
216 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
31955158 |
tgcctaatggatgtcctatgtactccaagagataagatagagagacttgttgaacatgttaacaacacaaaaaaaagcatcccatacgctgttctaagtt |
31955059 |
T |
|
| Q |
217 |
aaggagactccttgaaggagtgtaaacagatcaatgcaccacataaaataggaaatcacataaggcctgctgtggttagaaattcttcctgggatgctta |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31955058 |
aaggagactccttgaaggagtgtaaacagatcaatgcaccacataaaataggaaatcacataaggcctgctgtggttagaaattcttcctgggatgctta |
31954959 |
T |
|
| Q |
317 |
taaaatattcttccatatcatatgtagatcctagctaaactgcgacatatataat |
371 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31954958 |
caaaatattcttccatatcatatgtagatcctagctaaactgcgacatatataat |
31954904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University