View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11353_low_13 (Length: 332)
Name: NF11353_low_13
Description: NF11353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11353_low_13 |
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| [»] scaffold0543 (2 HSPs) |
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| [»] scaffold0492 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 79 - 322
Target Start/End: Original strand, 49868345 - 49868588
Alignment:
| Q |
79 |
tcaggtgggttaaattatgaaacatgcattgtaatgtaatggaccctgtctgcatgagctataaagttaaagagtaaactaattaacttgttgaatttaa |
178 |
Q |
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| T |
49868345 |
tcaggtgggttaaattatgaaacatgcattgtaatgtaatggaccctgtctgcatgagctataaagttaaagagtgaactaattaacttgttgaatttaa |
49868444 |
T |
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| Q |
179 |
gagactaatgcagagattgttggcgttatgaagccaatcatactcaataaaattatcagaaacgttagctcttaccaaaattggataggcttaaaagcac |
278 |
Q |
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| T |
49868445 |
gagactaatgcagagattgttggcgttatgaagccaatcatactcaataaaattatcagaaacgttagctcttaccaaaattggataggcttaaaagcac |
49868544 |
T |
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| Q |
279 |
cttaagacctccataattatttttctttaaacttaaatcctttg |
322 |
Q |
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| T |
49868545 |
cttaagacctccataattatttttctttaaacttaaatcctttg |
49868588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 28 - 77
Target Start/End: Original strand, 49868244 - 49868293
Alignment:
| Q |
28 |
atgaatgataagagtttgaagtttagggaaattttcaagcagttcaatca |
77 |
Q |
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| T |
49868244 |
atgaatgataagagtttgaagtttagggaaattttcaagcagttcaatca |
49868293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 59
Target Start/End: Complemental strand, 39559519 - 39559486
Alignment:
| Q |
26 |
tcatgaatgataagagtttgaagtttagggaaat |
59 |
Q |
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| T |
39559519 |
tcatgaatgataagagtttgaagtttggggaaat |
39559486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0543 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: scaffold0543
Description:
Target: scaffold0543; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 31 - 71
Target Start/End: Original strand, 2380 - 2420
Alignment:
| Q |
31 |
aatgataagagtttgaagtttagggaaattttcaagcagtt |
71 |
Q |
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| T |
2380 |
aatgataagagtttgaagtttggggaaattttcaagcagtt |
2420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0543; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 186
Target Start/End: Original strand, 2563 - 2596
Alignment:
| Q |
153 |
taaactaattaacttgttgaatttaagagactaa |
186 |
Q |
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| T |
2563 |
taaactaattaactttttgaatttaagagactaa |
2596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0492 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: scaffold0492
Description:
Target: scaffold0492; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 31 - 71
Target Start/End: Original strand, 3926 - 3966
Alignment:
| Q |
31 |
aatgataagagtttgaagtttagggaaattttcaagcagtt |
71 |
Q |
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| T |
3926 |
aatgataagagtttgaagtttggggaaattttcaagcagtt |
3966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0492; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 186
Target Start/End: Original strand, 4109 - 4142
Alignment:
| Q |
153 |
taaactaattaacttgttgaatttaagagactaa |
186 |
Q |
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| T |
4109 |
taaactaattaactttttgaatttaagagactaa |
4142 |
T |
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