View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11353_low_15 (Length: 285)

Name: NF11353_low_15
Description: NF11353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11353_low_15
NF11353_low_15
[»] chr5 (2 HSPs)
chr5 (160-278)||(27313940-27314058)
chr5 (13-88)||(27314130-27314205)
[»] chr3 (2 HSPs)
chr3 (200-267)||(2593010-2593076)
chr3 (196-239)||(29554669-29554712)
[»] chr6 (3 HSPs)
chr6 (197-238)||(10740746-10740787)
chr6 (196-242)||(18792736-18792782)
chr6 (200-242)||(21858213-21858255)
[»] chr4 (2 HSPs)
chr4 (197-240)||(24131938-24131981)
chr4 (198-240)||(16869684-16869726)
[»] scaffold0511 (1 HSPs)
scaffold0511 (196-242)||(11359-11405)
[»] chr7 (2 HSPs)
chr7 (198-240)||(46964313-46964355)
chr7 (222-267)||(21812626-21812671)
[»] chr2 (1 HSPs)
chr2 (198-240)||(8985748-8985790)
[»] chr1 (1 HSPs)
chr1 (226-267)||(9253288-9253329)


Alignment Details
Target: chr5 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 160 - 278
Target Start/End: Complemental strand, 27314058 - 27313940
Alignment:
Q  160 ggttttgggaaaacaacagcggaaaagatgcaaaatgttcaaggaggatcaaacaaagctcttgataccatgttaacaatatatggtttcaatagagaat 259  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  27314058 ggttttgggaaaacaacagcggaaaagatgcaaaatgttcaaggaggatcgaacaaagctcttgataccatgttaacaatatatagtttcaatagagaat 27313959  T
Q  260 aacaaagattactagagaa 278  Q
    |||||||||||||||||||    
T  27313958 aacaaagattactagagaa 27313940  T

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Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 13 - 88
Target Start/End: Complemental strand, 27314205 - 27314130
Alignment:
Q  13 aacctgtggaatacaaccagacaactagcaaacttcggcgagataaaacaattcagcgaggggtttgaacagtacg 88  Q
    ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27314205 aacctatggaatacaaccaggcaactagcaaacttcggcgagataaaacaattcagcgaggggtttgaacagtacg 27314130  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 200 - 267
Target Start/End: Original strand, 2593010 - 2593076
Alignment:
Q  200 aaggaggatcaaacaaagctcttgataccatgttaacaatatatggtttcaatagagaataacaaaga 267  Q
    |||||||||||||  |||||||  ||| |||||||||||| || ||||||||||||||||||||||||    
T  2593010 aaggaggatcaaaacaagctcta-atatcatgttaacaatctagggtttcaatagagaataacaaaga 2593076  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 239
Target Start/End: Complemental strand, 29554712 - 29554669
Alignment:
Q  196 gttcaaggaggatcaaacaaagctcttgataccatgttaacaat 239  Q
    |||||||| ||||| ||||||||| |||||||||||||||||||    
T  29554712 gttcaaggtggatcgaacaaagcttttgataccatgttaacaat 29554669  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 238
Target Start/End: Complemental strand, 10740787 - 10740746
Alignment:
Q  197 ttcaaggaggatcaaacaaagctcttgataccatgttaacaa 238  Q
    ||||||||||||||||| | ||||||||||||||||||||||    
T  10740787 ttcaaggaggatcaaaccatgctcttgataccatgttaacaa 10740746  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 242
Target Start/End: Original strand, 18792736 - 18792782
Alignment:
Q  196 gttcaaggaggatcaaacaaagctcttgataccatgttaacaatata 242  Q
    |||||||| ||||| |||||||||||| |||| ||||||||||||||    
T  18792736 gttcaaggcggatcgaacaaagctcttcatacaatgttaacaatata 18792782  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 242
Target Start/End: Complemental strand, 21858255 - 21858213
Alignment:
Q  200 aaggaggatcaaacaaagctcttgataccatgttaacaatata 242  Q
    |||||||||||||  |||||||||||||||||||||| |||||    
T  21858255 aaggaggatcaaatcaagctcttgataccatgttaactatata 21858213  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 240
Target Start/End: Complemental strand, 24131981 - 24131938
Alignment:
Q  197 ttcaaggaggatcaaacaaagctcttgataccatgttaacaata 240  Q
    ||||||| ||||||||  ||||||||||||||||||||||||||    
T  24131981 ttcaaggtggatcaaaacaagctcttgataccatgttaacaata 24131938  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 240
Target Start/End: Complemental strand, 16869726 - 16869684
Alignment:
Q  198 tcaaggaggatcaaacaaagctcttgataccatgttaacaata 240  Q
    ||||||||| |||||| | ||||||||||||||||||||||||    
T  16869726 tcaaggagggtcaaaccacgctcttgataccatgttaacaata 16869684  T

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Target: scaffold0511 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0511
Description:

Target: scaffold0511; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 242
Target Start/End: Complemental strand, 11405 - 11359
Alignment:
Q  196 gttcaaggaggatcaaacaaagctcttgataccatgttaacaatata 242  Q
    |||||||| ||||| |||||||||||| |||| ||||||||||||||    
T  11405 gttcaaggcggatcgaacaaagctcttcatacaatgttaacaatata 11359  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 240
Target Start/End: Original strand, 46964313 - 46964355
Alignment:
Q  198 tcaaggaggatcaaacaaagctcttgataccatgttaacaata 240  Q
    ||||||||| |||||| | ||||||||||||||||||||||||    
T  46964313 tcaaggagggtcaaaccacgctcttgataccatgttaacaata 46964355  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 267
Target Start/End: Complemental strand, 21812671 - 21812626
Alignment:
Q  222 tgataccatgttaacaatatatggtttcaatagagaataacaaaga 267  Q
    |||||||||||||||||||||   |||||| |||||||||||||||    
T  21812671 tgataccatgttaacaatataatatttcaaaagagaataacaaaga 21812626  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 240
Target Start/End: Complemental strand, 8985790 - 8985748
Alignment:
Q  198 tcaaggaggatcaaacaaagctcttgataccatgttaacaata 240  Q
    ||||||||| |||||| | ||||||||||||||||||||||||    
T  8985790 tcaaggagggtcaaaccacgctcttgataccatgttaacaata 8985748  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 267
Target Start/End: Original strand, 9253288 - 9253329
Alignment:
Q  226 accatgttaacaatatatggtttcaatagagaataacaaaga 267  Q
    ||||||||||||| | | ||||||||||||||||||||||||    
T  9253288 accatgttaacaaaacaaggtttcaatagagaataacaaaga 9253329  T

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