View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11353_low_20 (Length: 256)
Name: NF11353_low_20
Description: NF11353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11353_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 47712764 - 47713013
Alignment:
| Q |
1 |
ctcctccctaggaaaaatcctctttgcgatactctcacacaacaatgtcgccctatcaaatgaagagtcaaccgaaggacaccatttcgcagcaagacta |
100 |
Q |
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| T |
47712764 |
ctcctccctaggaaaaatcctcttcgcgatactctcacacaacaatgtcgccctatcaaatgaagagtcaaccgaaggacaccatttcgcagcaagacta |
47712863 |
T |
|
| Q |
101 |
atatttgtggacgacccacatttcaaaaactcaatatctttctttaaacaatcagaaaaatgatcagatatacaatcatgaagaaacttaaaatgagggt |
200 |
Q |
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| T |
47712864 |
atatttgtggacgacccacatttcaaaaactcaatatctttctttaaacaatcagcaaaatgatcagatatacaatcatgaagaaacttaaaatgagggt |
47712963 |
T |
|
| Q |
201 |
cacgattataccgttcaacaagcttcttagccaatacaatcttcttctct |
250 |
Q |
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| T |
47712964 |
cacgattataccgttcaacaagcttcttagccaatacaatcttcttctct |
47713013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 2 - 250
Target Start/End: Complemental strand, 19785721 - 19785473
Alignment:
| Q |
2 |
tcctccctaggaaaaatcctctttgcgatactctcacacaacaatgtcgccctatcaaatgaagagtcaaccgaaggacaccatttcgcagcaagactaa |
101 |
Q |
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| T |
19785721 |
tcctcccgagggaagatcctctttgcaatactctcacacagaagagtcgatcgatcaaaggaagagtcaacagaagggcaccatttagcagcaaggctga |
19785622 |
T |
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| Q |
102 |
tatttgtggacgacccacatttcaaaaactcaatatctttctttaaacaatcagaaaaatgatcagatatacaatcatgaagaaacttaaaatgagggtc |
201 |
Q |
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| T |
19785621 |
ttttattgggcaacccagatttcaaaaactgaagatccttcttcaaacaatcagcaaaatgatcagagatagaatcatgaagaaacttaaaatgagggtc |
19785522 |
T |
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| Q |
202 |
acgattataccgttcaacaagcttcttagccaatacaatcttcttctct |
250 |
Q |
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| | || || |||||||||||||||||||| ||||| |||||||| |
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| T |
19785521 |
ggtagtgtaacgatcaacaagcttcttagccaaggcaatcctcttctct |
19785473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 55 - 250
Target Start/End: Original strand, 19795919 - 19796114
Alignment:
| Q |
55 |
atcaaatgaagagtcaaccgaaggacaccatttcgcagcaagactaatatttgtggacgacccacatttcaaaaactcaatatctttctttaaacaatca |
154 |
Q |
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|||||| ||||||||||| ||||| |||||||| ||||||||||| || || ||| |||||| ||||||||||||| | ||| ||||| ||||||||| |
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| T |
19795919 |
atcaaaggaagagtcaacagaagggcaccatttagcagcaagactgattttattgggcgacccggatttcaaaaactcgagatccttcttcaaacaatca |
19796018 |
T |
|
| Q |
155 |
gaaaaatgatcagatatacaatcatgaagaaacttaaaatgagggtcacgattataccgttcaacaagcttcttagccaatacaatcttcttctct |
250 |
Q |
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| T |
19796019 |
gcgaaatgatcagagatacaatcgtgaagaaacttaaaattgggatcggtagtataacgatcaacaagcttcttagctaatgcaatcctcttctct |
19796114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 55 - 250
Target Start/End: Original strand, 15835226 - 15835421
Alignment:
| Q |
55 |
atcaaatgaagagtcaaccgaaggacaccatttcgcagcaagactaatatttgtggacgacccacatttcaaaaactcaatatctttctttaaacaatca |
154 |
Q |
| |
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|||||| ||||||| || || || |||||||| ||||||||||| || ||| ||| |||||| ||||||||||||||| ||| ||||| ||||||||| |
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| T |
15835226 |
atcaaaggaagagtaaagagaggggcaccatttagcagcaagactgatttttctgggtgacccagatttcaaaaactcaagatccttcttcaaacaatca |
15835325 |
T |
|
| Q |
155 |
gaaaaatgatcagatatacaatcatgaagaaacttaaaatgagggtcacgattataccgttcaacaagcttcttagccaatacaatcttcttctct |
250 |
Q |
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| T |
15835326 |
gcaaaatgatgagagatacaattatgaaggaacttaaaatcagggtcacgattgtatcgatcaacaagcttcttagccaaggcaatcctcttctct |
15835421 |
T |
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