View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11353_low_22 (Length: 243)
Name: NF11353_low_22
Description: NF11353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11353_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 12)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 9676012 - 9675787
Alignment:
| Q |
1 |
ttgttaaactcaataactgtttatagtacatgcgtaacctgttgaccagcgtcagtacactaagataaagttcattgtcttcaacagcattcttctgtat |
100 |
Q |
| |
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||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9676012 |
ttgttaaacctaataactgtttatagtgcatgcgtaacctgttgaccagcgtcagtacactaagataaagttcattgtcttcaacagcattcttctgtat |
9675913 |
T |
|
| Q |
101 |
tctatagccatggtagattttcatcgtttagctcaatacagctcagctgttggaaggcgagttcttattcacgcagtttcatgtatttgccttgatttgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||| |
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|
| T |
9675912 |
tctatagccatggtagattttcatcgtttagctcaatacagctcagctgttgaaaggcgagttcttattcacgctgtttcatgtatttgccctgatttgt |
9675813 |
T |
|
| Q |
201 |
aaccaagtgattatggttaatgtttt |
226 |
Q |
| |
|
|| |||||||||||||||||| |||| |
|
|
| T |
9675812 |
aatcaagtgattatggttaatatttt |
9675787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 2 - 121
Target Start/End: Complemental strand, 10213608 - 10213488
Alignment:
| Q |
2 |
tgttaaactcaataactgtttatagtacatgcgtaacctgttgaccagcgtcagtacactaagataaagt-tcattgtcttcaacagcattcttctgtat |
100 |
Q |
| |
|
|||||||| |||||||||||||||| ||||| ||||| ||||||||| |||||||||||| |||||| | ||||||||||||||| |||||| |||| |
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|
| T |
10213608 |
tgttaaacctaataactgtttatagtgcatgcataaccggttgaccagtgtcagtacactatgataaactctcattgtcttcaacaaaattcttttgtac |
10213509 |
T |
|
| Q |
101 |
tctatagccatggtagatttt |
121 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
10213508 |
tctatagccatggtagatttt |
10213488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 21 - 121
Target Start/End: Original strand, 13855399 - 13855500
Alignment:
| Q |
21 |
ttatagtacatgcgtaacctgttgaccagcgtcagtacactaagataaagt-tcattgtcttcaacagcattcttctgtattctatagccatggtagatt |
119 |
Q |
| |
|
||||||| |||| ||||| ||||||||| ||||||||||||||||||| | ||||||||||||||| |||||||||||||||||| |||||||||||| |
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|
| T |
13855399 |
ttatagtgcatgtataaccagttgaccagtgtcagtacactaagataaattctcattgtcttcaacatgattcttctgtattctatatccatggtagatt |
13855498 |
T |
|
| Q |
120 |
tt |
121 |
Q |
| |
|
|| |
|
|
| T |
13855499 |
tt |
13855500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 12 - 121
Target Start/End: Complemental strand, 12105713 - 12105610
Alignment:
| Q |
12 |
aataactgtttatagtacatgcgtaacctgttgaccagcgtcagtacactaagataaagt-tcattgtcttcaacagcattcttctgtattctatagcca |
110 |
Q |
| |
|
|||||||||| ||||| ||||| ||| | |||||||| |||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||| |
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|
| T |
12105713 |
aataactgtt-atagtgcatgcataagcagttgaccaacgtcagtacactaaaataaagtctcattgtcttcaa------tcttctgtattctatagcca |
12105621 |
T |
|
| Q |
111 |
tggtagatttt |
121 |
Q |
| |
|
||||||||||| |
|
|
| T |
12105620 |
tggtagatttt |
12105610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 123 - 211
Target Start/End: Complemental strand, 10213432 - 10213343
Alignment:
| Q |
123 |
atcgtttagctcaatacagctcagctgttggaaggcgagttcttattc-acgcagtttcatgtatttgccttgatttgtaaccaagtgat |
211 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |||||||||||| || | ||||| |||||||||| ||||| ||| |||||||| |
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|
| T |
10213432 |
atcgtttagctcaatacagctcagcggttggaaggtgagttcttattcaacactgtttcgtgtatttgccaggatttttaatcaagtgat |
10213343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 121
Target Start/End: Complemental strand, 9684341 - 9684234
Alignment:
| Q |
15 |
aactgtttatagtacatgcgtaacctgttgaccagcgtcagtacactaagataaagt-tcattgtcttcaacagcattcttctgtattctatagccatgg |
113 |
Q |
| |
|
|||||||||| || ||||| ||| ||||||| |||| ||||||||||||||| | || ||||||||||||| |||||| ||||| |||||||||||| |
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|
| T |
9684341 |
aactgtttattgtgcatgcataatttgttgacttgcgtaagtacactaagataaggcctctttgtcttcaacaggattcttttgtatgctatagccatgg |
9684242 |
T |
|
| Q |
114 |
tagatttt |
121 |
Q |
| |
|
|||||||| |
|
|
| T |
9684241 |
tagatttt |
9684234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 123 - 188
Target Start/End: Complemental strand, 12105554 - 12105489
Alignment:
| Q |
123 |
atcgtttagctcaatacagctcagctgttggaaggcgagttcttattcacgcagtttcatgtattt |
188 |
Q |
| |
|
||||||| ||||||| ||||||||| |||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
12105554 |
atcgtttctctcaataaagctcagctcttggaaggtgagttcttattcacgctgtttcatgtattt |
12105489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 121
Target Start/End: Complemental strand, 10211414 - 10211310
Alignment:
| Q |
18 |
tgtttatagtacatgcgtaacctgttgaccagcgtcagtacactaagataaagt-tcattgtcttcaacagcattcttctgtattctatagccatggtag |
116 |
Q |
| |
|
|||||||||| |||| || | |||||||| |||||||||||||||| ||||| || |||||||||||| |||||| ||||| ||||||||||||| | |
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|
| T |
10211414 |
tgtttatagtgtatgcatagcttgttgacctgcgtcagtacactaaggtaaagcctctttgtcttcaacaagattcttttgtatactatagccatggttg |
10211315 |
T |
|
| Q |
117 |
atttt |
121 |
Q |
| |
|
||||| |
|
|
| T |
10211314 |
atttt |
10211310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 83
Target Start/End: Complemental strand, 9677557 - 9677479
Alignment:
| Q |
5 |
taaactcaataactgtttatagtacatgcgtaacctgttgaccagcgtcagtacactaagataaagt-tcattgtcttca |
83 |
Q |
| |
|
|||||| |||||||||| ||||| ||||| ||||| |||||||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
9677557 |
taaacttaataactgtt-atagtgcatgcataaccagttgaccagcatcagtacactaagataaagtcacattgtcttca |
9677479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 123 - 171
Target Start/End: Complemental strand, 9684178 - 9684130
Alignment:
| Q |
123 |
atcgtttagctcaatacagctcagctgttggaaggcgagttcttattca |
171 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||| ||||||||||||| |
|
|
| T |
9684178 |
atcgtttagctcaatacagctcatcggttggaaggtgagttcttattca |
9684130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 173
Target Start/End: Complemental strand, 10211254 - 10211204
Alignment:
| Q |
123 |
atcgtttagctcaatacagctcagctgttggaaggcgagttcttattcacg |
173 |
Q |
| |
|
||||||||||||||| ||||||| ||||| ||||| ||| ||||||||||| |
|
|
| T |
10211254 |
atcgtttagctcaatgcagctcatctgttagaaggtgagctcttattcacg |
10211204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 226
Target Start/End: Complemental strand, 9677476 - 9677394
Alignment:
| Q |
147 |
ctgttggaaggcgagttcttattcacgcagtttcatgtatttgccttgatttgtaaccaag---tgattatggttaatgtttt |
226 |
Q |
| |
|
||||||||||| ||||||||| |||| | |||||| | ||||||||||||| | | |||| ||||||||||||||||||| |
|
|
| T |
9677476 |
ctgttggaaggtgagttcttactcacacggtttcacatttttgccttgattttttatcaagtgatgattatggttaatgtttt |
9677394 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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