View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11353_low_24 (Length: 240)
Name: NF11353_low_24
Description: NF11353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11353_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 36282776 - 36282998
Alignment:
| Q |
1 |
ttttacatatagctagtctatagcaccgccaaaccgccaccgcccactatctcaaacagttaactttaccaaatggttatcatcttctttttaacttcat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
36282776 |
ttttacatatagctagtctatagcaccgccaaaccgccaccgcccactatctcaaacaattaactttaccaaatggttatcatcttctttttaacttcat |
36282875 |
T |
|
| Q |
101 |
atcatactttcccaccgtatttcactgtcactgtaaaatcctaccaccgttcatatttcctctcctttaggtacgttttcctcttccatttcacctctaa |
200 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36282876 |
atcatactttcccaccgtatttcaccgtcactgtaaaatcctaccaccgttcatatttcctctcctttaggtacgttttcctcttccatttcacctctaa |
36282975 |
T |
|
| Q |
201 |
ttttatttacatttcccatatcc |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
36282976 |
ttttatttacatttcccatatcc |
36282998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 37 - 116
Target Start/End: Original strand, 29897434 - 29897520
Alignment:
| Q |
37 |
ccaccgcccactatctcaaacagttaactttaccaaatggtta-------tcatcttctttttaacttcatatcatactttcccacc |
116 |
Q |
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|||| |||||||| ||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||| ||||| |
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| T |
29897434 |
ccactgcccactacctcaaaccattaactttaccaaatggttaaacatgttcttcttctttttaacttcatatcatacttttccacc |
29897520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 170 - 209
Target Start/End: Original strand, 29914536 - 29914575
Alignment:
| Q |
170 |
ggtacgttttcctcttccatttcacctctaattttattta |
209 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| |
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| T |
29914536 |
ggtacgttttcctcttccatttcacctctaatttcattta |
29914575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 170 - 209
Target Start/End: Original strand, 29963689 - 29963728
Alignment:
| Q |
170 |
ggtacgttttcctcttccatttcacctctaattttattta |
209 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||| |
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| T |
29963689 |
ggtacgttttcctcttccatttcacctctaatttcattta |
29963728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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