View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11353_low_25 (Length: 216)
Name: NF11353_low_25
Description: NF11353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11353_low_25 |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 147; Significance: 1e-77; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 52 - 198
Target Start/End: Complemental strand, 5603100 - 5602954
Alignment:
| Q |
52 |
caacttgtttgtttgattcattatggcttcatcccttttgtgctcatatctttctaaatttaaactgcaatatattgcaaaagaacccgtttacgatatt |
151 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5603100 |
caacttgtttgtttgattcattatggcttcatcccttttgtgctcatatctttctaaatttaaactgcaatatattgcaaaagaacccgtttacgatatt |
5603001 |
T |
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| Q |
152 |
cagctagagccaacattggaaaattatctctatacattggataatgc |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5603000 |
cagctagagccaacattggaaaattatctctatacattggataatgc |
5602954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 52 - 198
Target Start/End: Original strand, 5632270 - 5632416
Alignment:
| Q |
52 |
caacttgtttgtttgattcattatggcttcatcccttttgtgctcatatctttctaaatttaaactgcaatatattgcaaaagaacccgtttacgatatt |
151 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5632270 |
caacttgtttgtttgattcattatggcttcatcccttttgtgctcatatctttctaaatttaaactgcaatatattgcaaaagaacccgtttacgatatt |
5632369 |
T |
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| Q |
152 |
cagctagagccaacattggaaaattatctctatacattggataatgc |
198 |
Q |
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| T |
5632370 |
cagctagagccaacattggaaaattatctctatacattggataatgc |
5632416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 58 - 198
Target Start/End: Complemental strand, 5602832 - 5602692
Alignment:
| Q |
58 |
gtttgtttgattcattatggcttcatcccttttgtgctcatatctttctaaatttaaactgcaatatattgcaaaagaacccgtttacgatattcagcta |
157 |
Q |
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| T |
5602832 |
gtttgtttgattctttatggctttatcccttttgtgctcatatctttctaaatttaaactgcaatatattgcaaaagaacccgtttacgatattcagcta |
5602733 |
T |
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| Q |
158 |
gagccaacattggaaaattatctctatacattggataatgc |
198 |
Q |
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| T |
5602732 |
gagccaacattggaaaattatctctatacattggataatgc |
5602692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 58 - 198
Target Start/End: Original strand, 5638110 - 5638250
Alignment:
| Q |
58 |
gtttgtttgattcattatggcttcatcccttttgtgctcatatctttctaaatttaaactgcaatatattgcaaaagaacccgtttacgatattcagcta |
157 |
Q |
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||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5638110 |
gtttgtttgattctttatggctttatcccttttgtgctcatatctttctaaatttaaactgcaatatattgcaaaagaacccgtttacgatattcagcta |
5638209 |
T |
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| Q |
158 |
gagccaacattggaaaattatctctatacattggataatgc |
198 |
Q |
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| T |
5638210 |
gagccaacattggaaaattatctctatacattggataatgc |
5638250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 58 - 198
Target Start/End: Original strand, 5638374 - 5638514
Alignment:
| Q |
58 |
gtttgtttgattcattatggcttcatcccttttgtgctcatatctttctaaatttaaactgcaatatattgcaaaagaacccgtttacgatattcagcta |
157 |
Q |
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||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5638374 |
gtttgtttgattctttatggctttatcccttttgtgctcatatctttctaaatttaaactgcaatatattgcaaaagaacccgtttacgatattcagcta |
5638473 |
T |
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| Q |
158 |
gagccaacattggaaaattatctctatacattggataatgc |
198 |
Q |
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| T |
5638474 |
gagccaacattggaaaattatctctatacattggataatgc |
5638514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 56 - 198
Target Start/End: Complemental strand, 5602249 - 5602106
Alignment:
| Q |
56 |
ttgtttgt-ttgattcattatggcttcatcccttttgtgctcatatctttctaaatttaaactgcaatatattgcaaaagaacccgtttacgatattcag |
154 |
Q |
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|||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5602249 |
ttgtttgtnttgattctttatggctttatcccttttgtgctcatatctttctaaatttaaactgcaatatattgcaaaagaacccgtttacgatattcag |
5602150 |
T |
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| Q |
155 |
ctagagccaacattggaaaattatctctatacattggataatgc |
198 |
Q |
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| T |
5602149 |
ctagagccaacattggaaaattatctctatacattggataatgc |
5602106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 58 - 198
Target Start/End: Original strand, 5651308 - 5651448
Alignment:
| Q |
58 |
gtttgtttgattcattatggcttcatcccttttgtgctcatatctttctaaatttaaactgcaatatattgcaaaagaacccgtttacgatattcagcta |
157 |
Q |
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||||||||||||| |||||||||||||||||||||| ||| ||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||| |
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| T |
5651308 |
gtttgtttgattctttatggcttcatcccttttgtgttcacatctttctaaacttaaactgcaatggattgagaaagaacccgtttacgatattcagcta |
5651407 |
T |
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| Q |
158 |
gagccaacattggaaaattatctctatacattggataatgc |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
5651408 |
gagccaacattggaaaattatctctatacattggataatgc |
5651448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 58 - 128
Target Start/End: Complemental strand, 5602570 - 5602500
Alignment:
| Q |
58 |
gtttgtttgattcattatggcttcatcccttttgtgctcatatctttctaaatttaaactgcaatatattg |
128 |
Q |
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||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5602570 |
gtttgtttgattctttatggctttatcccttttgtgctcatatctttctaaatttaaactgcaatatattg |
5602500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 188
Target Start/End: Original strand, 5656652 - 5656697
Alignment:
| Q |
143 |
tacgatattcagctagagccaacattggaaaattatctctatacat |
188 |
Q |
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| T |
5656652 |
tacgatattcagctagagcccacattggaaatatatctctatacat |
5656697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 141 - 190
Target Start/End: Original strand, 5718265 - 5718314
Alignment:
| Q |
141 |
tttacgatattcagctagagccaacattggaaaattatctctatacattg |
190 |
Q |
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|||||||||||||||||||||| ||||||| || |||||||| |||||| |
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| T |
5718265 |
tttacgatattcagctagagcccacattgggaatatatctctaaacattg |
5718314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 198
Target Start/End: Original strand, 88564 - 88628
Alignment:
| Q |
134 |
gaacccgtttacgatattcagctagagccaacattggaaaattatctctatacattggataatgc |
198 |
Q |
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| T |
88564 |
gaacccgtctacgatactcagccagagcccacaatggaaaaatatttctatacattgggtaatgc |
88628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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