View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11353_low_26 (Length: 210)
Name: NF11353_low_26
Description: NF11353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11353_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 87; Significance: 7e-42; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 13 - 107
Target Start/End: Original strand, 47241069 - 47241163
Alignment:
| Q |
13 |
agcagagagggtacaaattaagataaagttgggtgtttcaaccgtagaggcagagtcttgtattcttcattgcaaaaataatagacaatggatta |
107 |
Q |
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| T |
47241069 |
agcagaaagggtacaaattaagataaagttgggtgtttcaaccatagaggcagagtcttgtattcttcattgcaaaaataatagacaatggatta |
47241163 |
T |
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Target: chr3; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 106 - 192
Target Start/End: Original strand, 47241445 - 47241531
Alignment:
| Q |
106 |
taatatcttttgcatcctttacacttgactcaattatacttcaaccatacaaatcataaacaataaaacaacactttaagtttcact |
192 |
Q |
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| T |
47241445 |
taatatcttttgcatcctttacacttgactcaattatacttcaaccatacaaatcataaacaataaaacaacactttaagtttcact |
47241531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 192
Target Start/End: Original strand, 47246044 - 47246225
Alignment:
| Q |
20 |
agggtacaaattaagataaagttgggtgtttcaaccgtagaggcagag--------tcttgtattcttcattgcaaaaataatagacaatggattaatat |
111 |
Q |
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| T |
47246044 |
agggtacaaattaagataaagttgggtgttttgatcatagaggcaaaaccgcaaaatcttgtattcttcattgctaaaataaaaaccaacggggta-tat |
47246142 |
T |
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| Q |
112 |
cttttgcatcctttacacttgactcaattatacttcaacc--atacaaatcataaacaataaaacaacactttaagtttcact |
192 |
Q |
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| T |
47246143 |
cttttgcgttctttacttttgattcaattatacttcgaccatatacatatcataaacaattaaacaacattataagttccact |
47246225 |
T |
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