View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11353_low_3 (Length: 728)
Name: NF11353_low_3
Description: NF11353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11353_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 625; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 625; E-Value: 0
Query Start/End: Original strand, 19 - 720
Target Start/End: Original strand, 278059 - 278756
Alignment:
| Q |
19 |
ctgaggaatctgactttatgaaccagttacttggtaactcctcattctcacaacatttctatcaaaattccaatttcggaactgaaactacattttggcc |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
278059 |
ctgaggaatctgactttatgaaccagttacttggtaactcctcattctcacaacatttctatcaaaattccaatttcggaactgaaactacattttggcc |
278158 |
T |
|
| Q |
119 |
accatatgattccacaatagttactgcacaagttcctagctcaacctctgataccagtaacctcttccccacaacaagttgcttcaacaacaatccagta |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
278159 |
accatatgattccacaatagttactgcacaagttcctagctcaacctctgatactagtaacctcttccccacaacaagttgtttcaacaacaatccagta |
278258 |
T |
|
| Q |
219 |
accacttttgactatatttccatgggtctttccatagattattccaaattcactccatgtacaacacaatctgatgaacaagttctagctagcaaaaatt |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
278259 |
accacttttgactatatttccatgggtctttccatagattattccaaattcactccatgtacaacacaatctgatgaacaagttctagctaacaaaaatt |
278358 |
T |
|
| Q |
319 |
tgcaggcccgaaaaacggaacgtgaaatactagtttctgaaccagaagaggataaaaccacaagcaaagaaaattcaggaagaagatctaggagctcaaa |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |
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| T |
278359 |
tgcaggcccgaaaaacggaacgtgaaatactagtttctgaaccagaagaggataaaaccacaagcacagaaaattcaggaaaaagatctaggagctcaaa |
278458 |
T |
|
| Q |
419 |
tgaggtaacaaacagaagccagaaggcccatgaatcttctaaatgtttcccttacta---ctgttttttatttcttctttccaactgatatgcatttcct |
515 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
278459 |
tgaggtaacaaa-------cagaaggcccatgaatcttctaaatgtctcccttactactgctgttttttatttcttctttccaactgatatgcatttcct |
278551 |
T |
|
| Q |
516 |
tttccatcacggtttatggtttggattttgattttctgaaattttccgtgtcatttgatattataggtcccaaagaacaagaggaatgttaaatgtagga |
615 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
278552 |
tttccaccacggtttatggtttggattttgattttctgaaattctccttgtcatttgatattataggtcccaaagaacaagaggaatgttaaatgtagga |
278651 |
T |
|
| Q |
616 |
agatgattaggtgtgcttctataagcactgaagagaatacaagtactggttctcaggatcagaacttaagcggttattgttcagaggatgagtccaattc |
715 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
278652 |
agatgattaggtgtgcttctataagcactgaagagaatacaagtactggttctcaggatcagaccttaagcggttattgttcagaggatgagtccaattc |
278751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 1e-30; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 569 - 717
Target Start/End: Complemental strand, 24653551 - 24653403
Alignment:
| Q |
569 |
tttgatattataggtcccaaagaacaagaggaatgttaaatgtaggaagatgattaggtgtgcttctataagcactgaagagaatacaagtactggttct |
668 |
Q |
| |
|
|||||| |||||||||| |||||| |||||||||||||||||||||||| || || |||| |||| |||||||| ||||||||||||| |||||||| |
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| T |
24653551 |
tttgattttataggtccgaaagaaagagaggaatgttaaatgtaggaagaacatgagatgtggttctgtaagcacttgagagaatacaagtcctggttct |
24653452 |
T |
|
| Q |
669 |
caggatcagaacttaagcggttattgttcagaggatgagtccaattctt |
717 |
Q |
| |
|
|||||||||| ||||||| || ||||||||| |||| |||||||||| |
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|
| T |
24653451 |
caggatcagaccttaagcaattgttgttcagataatgaatccaattctt |
24653403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 568 - 686
Target Start/End: Complemental strand, 24685277 - 24685159
Alignment:
| Q |
568 |
atttgatattataggtcccaaagaacaagaggaatgttaaatgtaggaagatgattaggtgtgcttctataagcactgaagagaatacaagtactggttc |
667 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||||||||| | ||||| || || |||| || ||||||||| |||||||||||| || ||||||| |
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|
| T |
24685277 |
atttgattttataggtccccaagaacaagaggaatgttaaatgcatgaagaatatgagatgtggttttataagcacagaagagaatacaggtcctggttc |
24685178 |
T |
|
| Q |
668 |
tcaggatcagaacttaagc |
686 |
Q |
| |
|
||| ||||||| ||||||| |
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|
| T |
24685177 |
tcaagatcagaccttaagc |
24685159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 569 - 678
Target Start/End: Complemental strand, 24682535 - 24682423
Alignment:
| Q |
569 |
tttgatattataggtcccaaagaacaagaggaat---gttaaatgtaggaagatgattaggtgtgcttctataagcactgaagagaatacaagtactggt |
665 |
Q |
| |
|
|||||| |||||||||| |||||| |||||||| |||||||||||||||| || || |||| |||| |||||||| |||||||||||||| ||||| |
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| T |
24682535 |
tttgattttataggtccgaaagaaagagaggaataatgttaaatgtaggaagaacatgagatgtggttctgtaagcacttaagagaatacaagtgctggt |
24682436 |
T |
|
| Q |
666 |
tctcaggatcaga |
678 |
Q |
| |
|
||||||||||||| |
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|
| T |
24682435 |
tctcaggatcaga |
24682423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 486 - 685
Target Start/End: Complemental strand, 24631957 - 24631760
Alignment:
| Q |
486 |
tttcttct-ttccaactgatatgcatttccttttccatcacggtttatggtttggattttgattttctgaaattttccgtgtcatttgatattataggtc |
584 |
Q |
| |
|
|||||||| |||||| ||||||| ||||| ||||||| ||| |||||||| || ||| |||||| ||| ||| ||| || ||||||| |||| ||| |
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|
| T |
24631957 |
tttcttctcttccaagtgatatggatttctttttccaacacaatttatggtctgt-tttcgattttgtgagattatcccggttatttgattttattagtc |
24631859 |
T |
|
| Q |
585 |
ccaaagaacaagaggaatgttaaatgtaggaagatgattaggtgtgcttctataagcactgaagagaatacaagtactggttctcaggatcagaacttaa |
684 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||| || || | || |||||||| ||| |||| ||||||||| ||||||| | |||||||| ||||| |
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|
| T |
24631858 |
ccaaagaacaagaggaa--ttaaatgtatgaagaatatgagatttggttctataatcacaaaagaaaatacaagtcctggttcgccggatcagaccttaa |
24631761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 335 - 438
Target Start/End: Complemental strand, 24685478 - 24685374
Alignment:
| Q |
335 |
ggaacgtgaaatactagtttctgaaccagaagaggataaaaccacaagcaaagaaaattcaggaagaagatctaggagctcaaatgaggta-acaaacag |
433 |
Q |
| |
|
||||| ||| ||||||||||||| |||| ||| |||||||||| ||||| ||| |||||||||| |||| |||||||||| | ||||||| ||||||| |
|
|
| T |
24685478 |
ggaacatgacatactagtttctggaccacgagatgataaaaccagaagcagagagaattcaggaaaaagacctaggagctcgactgaggtagacaaacaa |
24685379 |
T |
|
| Q |
434 |
aagcc |
438 |
Q |
| |
|
||||| |
|
|
| T |
24685378 |
aagcc |
24685374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 8e-26; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 259 - 425
Target Start/End: Complemental strand, 41800363 - 41800197
Alignment:
| Q |
259 |
attccaaattcactccatgtacaacacaatctgatgaa--caagttctagctagcaaaaatttgcaggcccgaaaaacggaacgtgaaatactagtttct |
356 |
Q |
| |
|
|||||||||||||||||| |||||| || | || || |||||||||||| ||| ||||||||||||| ||| |||||||||||||||||||||| |
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|
| T |
41800363 |
attccaaattcactccatatacaaccgaacccgacgagagcaagttctagctgccaagaatttgcaggcccaaaa---ggaacgtgaaatactagtttct |
41800267 |
T |
|
| Q |
357 |
gaaccagaagaggataaaaccacaagcaaagaaaattcagg-aagaagatctaggagctcaaatgaggta |
425 |
Q |
| |
|
|||| |||||| |||||||| | ||||| |||||||||||| || ||||| |||||||||||| |||||| |
|
|
| T |
41800266 |
gaactagaagaagataaaacaagaagcacagaaaattcaggaaaaaagatgtaggagctcaaacgaggta |
41800197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 505 - 677
Target Start/End: Complemental strand, 41806256 - 41806086
Alignment:
| Q |
505 |
atgcatttccttttccatcacggtttatggtttggattttgattttctgaaattttccgtgtcatttgatattataggtcccaaagaacaagaggaatgt |
604 |
Q |
| |
|
|||||||||||||||| || |||||||||||| ||| |||||| ||| ||| ||| ||| ||||||| ||||||||||| ||||||||| ||||| |
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|
| T |
41806256 |
atgcatttccttttcctgcaaagtttatggtttgtgttt-gattttgtgagattctccttgttatttgattttataggtcccgcggaacaagag-aatgt |
41806159 |
T |
|
| Q |
605 |
taaatgtaggaagatgattaggtgtgcttctataagcactgaagagaatacaagtactggttctcaggatcag |
677 |
Q |
| |
|
||| ||||| |||| | || | ||||||||||||||||||||||||||| || ||||||||||| ||||| |
|
|
| T |
41806158 |
taactgtagaaagaatgtaagacgggcttctataagcactgaagagaatacacgtcctggttctcagcatcag |
41806086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 627 - 678
Target Start/End: Complemental strand, 41800031 - 41799980
Alignment:
| Q |
627 |
tgtgcttctataagcactgaagagaatacaagtactggttctcaggatcaga |
678 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
41800031 |
tgtgcttctataagcactgaagaaaatacaagtcctggttctcaggatcaga |
41799980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 501 - 604
Target Start/End: Complemental strand, 41800138 - 41800036
Alignment:
| Q |
501 |
tgatatgcatttccttttccatcacggtttatggtttggattttgattttctgaaattttccgtgtcatttgatattataggtcccaaagaacaagagga |
600 |
Q |
| |
|
|||| ||||||||||||||| ||| |||||||||||| ||| |||||| | | ||| ||| || ||||||| ||||||||||| ||||||||| ||| |
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|
| T |
41800138 |
tgatgtgcatttccttttcctgcacagtttatggtttgtgttt-gattttgttagattctcctggttatttgattttataggtcccgaagaacaagggga |
41800040 |
T |
|
| Q |
601 |
atgt |
604 |
Q |
| |
|
|||| |
|
|
| T |
41800039 |
atgt |
41800036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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