View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11353_low_6 (Length: 506)
Name: NF11353_low_6
Description: NF11353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11353_low_6 |
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| [»] chr4 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 482; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 1 - 506
Target Start/End: Complemental strand, 56169269 - 56168764
Alignment:
| Q |
1 |
cataaaataggttagcacagcctagagaaagtgataaacaaaatcataaaagacaaacactaaagttaaatgataaaaagcattgtatcataataggcat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
56169269 |
cataaaataggttagcacagcctagagaaagtgataaacaaaatcataaaagacaaacactaaagtgaaatgataaaaagcattatatcataataggcat |
56169170 |
T |
|
| Q |
101 |
aagacaaacgttaatgccaaataacaagaccaatcaaaagattgtcatctaaaattatcaattcttgttagaaatataataaacaggtagcaactctagt |
200 |
Q |
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| T |
56169169 |
aagacaaacgttaatgccaaataacaagaccaatcaaaagattgtcatctaaaattatcaattcttgttagaaatataataaacaggtagcaactctagt |
56169070 |
T |
|
| Q |
201 |
caggcataacaatagcaatgacaatgatatcaggacaaaaggaatgccttaattgaactttatacacgatcctatatataaccgcacatattaggctcct |
300 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56169069 |
cagccataacaatagcaatgacaatgatatcaggacaaaaggaatgccttaattgaactttatacacgatcctatatataaccgcacatattaggctcct |
56168970 |
T |
|
| Q |
301 |
aagcatcactagcaaaatgttcattgatattattacctgcaatacgcatatatgcctttaaacctcaaaagaaagttctctaatgggcgaaaacagtgtc |
400 |
Q |
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| T |
56168969 |
aagcatcactagtaaaatgttcattgatattattacctgcaatacgcatatatgcctttaaacctcaaaagaaagttctttaatgggcaaaaacagtgtc |
56168870 |
T |
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| Q |
401 |
atttcgcctaggtggtctgtcaggaatagatcctggcttgaatttggaagcttcatgccttgccaattcaggtggaacaggactgttactctgaatgagc |
500 |
Q |
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| T |
56168869 |
atttcgcctaggtggtctgtcaggaatagatcctggcttgaatttggaagcttcatgccttgccaattcaggtggaacaggactgttactctgaatgagc |
56168770 |
T |
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| Q |
501 |
atctgc |
506 |
Q |
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| T |
56168769 |
atctgc |
56168764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 78 - 506
Target Start/End: Original strand, 706522 - 706946
Alignment:
| Q |
78 |
aagcattgtatcataataggcataagacaaacgttaatgccaaataacaagaccaatcaaaagattgtcatctaaaattatcaattcttgttagaaatat |
177 |
Q |
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||||||| |||||||||| |||||| ||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
706522 |
aagcattatatcataataagcataaaacaaagattaacaccaaataacaagaccaatcaaaagattgtcatctaaaactatcaattcttgttagaaatat |
706621 |
T |
|
| Q |
178 |
aataaacaggtagcaactctagtcaggcataacaatagcaatgacaatgatatcaggacaaaaggaatgccttaattgaactttatacacgatcctatat |
277 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||| |||||||||| |
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| T |
706622 |
aataaacaggtagcaactctagtcaggcataacaatagcaatggcaatgatatcaggacaaaaggaatgccttaattgaatttcatacaagatcctatat |
706721 |
T |
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| Q |
278 |
ataaccgcacatattaggctcctaagcatcactagcaaaatgttcattgatattattacctgcaatacgcatatatgcctttaaacctcaaaagaaagtt |
377 |
Q |
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|||| |||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||| |
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| T |
706722 |
ataatcgcacatattaggctcctaagcatcacttgcaaaatattcattgatat--ttacctgcaatatgcatatatgcctttaaacctc--aagaaagtt |
706817 |
T |
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| Q |
378 |
ctctaatgggcgaaaacagtgtcatttcgcctaggtggtctgtcaggaatagatcctggcttgaatttggaagcttcatgccttgccaattcaggtggaa |
477 |
Q |
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|||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
706818 |
ctctaatgggtaaaaacagtgtcgtttcgcctaggtggtctgtcgggaatagatcctggcttgaatttggaagcttcatgccttgccaattcatgtggaa |
706917 |
T |
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| Q |
478 |
caggactgttactctgaatgagcatctgc |
506 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
706918 |
caggactgttactctgaatgagcatctgc |
706946 |
T |
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