View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11354_low_2 (Length: 438)

Name: NF11354_low_2
Description: NF11354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11354_low_2
NF11354_low_2
[»] chr6 (1 HSPs)
chr6 (18-187)||(1889890-1890058)
[»] chr3 (1 HSPs)
chr3 (341-389)||(36797686-36797734)
[»] chr8 (1 HSPs)
chr8 (265-343)||(9123854-9123933)
[»] chr4 (2 HSPs)
chr4 (346-416)||(25869578-25869649)
chr4 (346-389)||(52254433-52254476)
[»] chr5 (1 HSPs)
chr5 (346-387)||(22661218-22661259)
[»] chr1 (2 HSPs)
chr1 (346-389)||(4280480-4280523)
chr1 (346-396)||(9964442-9964492)
[»] chr2 (2 HSPs)
chr2 (293-339)||(41232146-41232192)
chr2 (341-397)||(44086851-44086907)


Alignment Details
Target: chr6 (Bit Score: 154; Significance: 2e-81; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 18 - 187
Target Start/End: Original strand, 1889890 - 1890058
Alignment:
Q  18 atttatggtccaaacgagcattgtcacatataactctacattattgatgaatgtgacttgtcatagtgatccataaagttgtggggaaacatgataaccc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  1889890 atttatggtccaaacgagcattgtcacatataactctacattattgatgaatgtgacttgtcatagtgatccacaaagttgtggggaaacatgataaccc 1889989  T
Q  118 ttgtcagatgggatctaaagtcttgaatttaaaaattgggagactaaaattttgttttgattaaaataaa 187  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  1889990 ttgtcagatgggatctaaagtcttgaatttaaaaattgggagactaaaattttg-ttcgattaaaataaa 1890058  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 341 - 389
Target Start/End: Original strand, 36797686 - 36797734
Alignment:
Q  341 aaactcacttgggttagtctgatgatattgacttgggatatgagagtgt 389  Q
    ||||||||||||||| |||||||||||||||||||  ||||||||||||    
T  36797686 aaactcacttgggttggtctgatgatattgacttgaaatatgagagtgt 36797734  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 265 - 343
Target Start/End: Original strand, 9123854 - 9123933
Alignment:
Q  265 atgtttctcaattgttgtcaatcccaccattgaatggaaaaat-gtgagattgatttataatataaaaaataagagtaaa 343  Q
    |||||| ||||||| |||||||| || |||| ||||||||||  |||| ||||| || ||||||||||||||||||||||    
T  9123854 atgtttttcaattggtgtcaatctcatcattaaatggaaaaaaagtgacattgacttttaatataaaaaataagagtaaa 9123933  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 346 - 416
Target Start/End: Complemental strand, 25869649 - 25869578
Alignment:
Q  346 cacttgggttagtctgatgatattgacttgggatatgagagtgtact-cttctcaacgtcttatgttcgatt 416  Q
    ||||||||||||| ||||| |||||||||| ||| ||||||||| || || ||||| |||||||||||||||    
T  25869649 cacttgggttagtttgatggtattgacttgagatctgagagtgtgctcctcctcaaagtcttatgttcgatt 25869578  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 389
Target Start/End: Complemental strand, 52254476 - 52254433
Alignment:
Q  346 cacttgggttagtctgatgatattgacttgggatatgagagtgt 389  Q
    |||||| ||| |||||||| ||||||||||||||||||||||||    
T  52254476 cacttgagttggtctgatggtattgacttgggatatgagagtgt 52254433  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 346 - 387
Target Start/End: Original strand, 22661218 - 22661259
Alignment:
Q  346 cacttgggttagtctgatgatattgacttgggatatgagagt 387  Q
    |||||||||||| ||||||||||||||||||||| |||||||    
T  22661218 cacttgggttagcctgatgatattgacttgggatctgagagt 22661259  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 389
Target Start/End: Complemental strand, 4280523 - 4280480
Alignment:
Q  346 cacttgggttagtctgatgatattgacttgggatatgagagtgt 389  Q
    ||||||||||||| |||||||||||||||||||  |||||||||    
T  4280523 cacttgggttagtatgatgatattgacttgggacttgagagtgt 4280480  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 396
Target Start/End: Original strand, 9964442 - 9964492
Alignment:
Q  346 cacttgggttagtctgatgatattgacttgggatatgagagtgtactcttc 396  Q
    |||||||||||| |||||| |||||||||||||| || |||||| ||||||    
T  9964442 cacttgggttagcctgatgttattgacttgggatctgggagtgtgctcttc 9964492  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 293 - 339
Target Start/End: Complemental strand, 41232192 - 41232146
Alignment:
Q  293 attgaatggaaaaatgtgagattgatttataatataaaaaataagag 339  Q
    ||||||||||||||  |||||||||||| ||||||||||||| ||||    
T  41232192 attgaatggaaaaaactgagattgatttttaatataaaaaatgagag 41232146  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 397
Target Start/End: Original strand, 44086851 - 44086907
Alignment:
Q  341 aaactcacttgggttagtctgatgatattgacttgggatatgagagtgtactcttct 397  Q
    |||||||||||| |||||  | || |||||||||||||| ||| |||||||||||||    
T  44086851 aaactcacttggattagttcggtggtattgacttgggatctgaaagtgtactcttct 44086907  T

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