View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11354_low_4 (Length: 302)
Name: NF11354_low_4
Description: NF11354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11354_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 2802566 - 2802848
Alignment:
| Q |
1 |
ataatagtttaaatcaatttctgatgatagctgtggtgctgtgttacatgatattctaatgcaacatcccttcatacaaattaagtataagctgaagcct |
100 |
Q |
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| T |
2802566 |
ataatagtttaaatcaatttctgatgatagttgtggtgctgtgttacatgatattctaatgcaacatcccttcatacaaattaagtataagttaatgc-- |
2802663 |
T |
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| Q |
101 |
gaacatctgtttctacatcttgatttcataaactgtttatcacacaaccagtatccactatccagtatccatatgttgaaaagatgtacctttcgtatag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2802664 |
-aacatctgtttctacatcttgatttcataaactgtttatcacacaaccagtatccactatccagtatccatatgttgaaaagatgtacctttcgtatag |
2802762 |
T |
|
| Q |
201 |
caccaacatgcataggaagatgtaccaaaatgtcaaatgcacccaaccaacatgttctcgtcatgatgaccttgttattttaaact |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2802763 |
caccaacatgcataggaagatgtaccaaaatgtcaaatgcacccaaccaacatgttctcgtcatgatgaccttgttattttaaact |
2802848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 1659048 - 1659000
Alignment:
| Q |
1 |
ataatagtttaaatcaatttctgatgatagctgtggtgctgtgttacat |
49 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
1659048 |
ataatagtttaaatcaatttctgatgatagttgtggtgctgtgttacat |
1659000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 153
Target Start/End: Complemental strand, 1679692 - 1679643
Alignment:
| Q |
104 |
catctgtttctacatcttgatttcataaactgtttatcacacaaccagta |
153 |
Q |
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| T |
1679692 |
catctgtttctacatctagatttcattaactgtttatatcacaaccagta |
1679643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 153
Target Start/End: Original strand, 2801036 - 2801085
Alignment:
| Q |
104 |
catctgtttctacatcttgatttcataaactgtttatcacacaaccagta |
153 |
Q |
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||||||||||||||||| |||||||| |||||||||| ||||||||||| |
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| T |
2801036 |
catctgtttctacatctagatttcattaactgtttatgtcacaaccagta |
2801085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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