View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11355_low_1 (Length: 390)

Name: NF11355_low_1
Description: NF11355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11355_low_1
NF11355_low_1
[»] chr2 (10 HSPs)
chr2 (14-82)||(19350686-19350754)
chr2 (247-324)||(36096329-36096406)
chr2 (231-327)||(35056893-35056989)
chr2 (246-317)||(34784935-34785006)
chr2 (231-290)||(24009346-24009405)
chr2 (249-318)||(12668379-12668448)
chr2 (271-318)||(30717508-30717555)
chr2 (274-320)||(18054784-18054830)
chr2 (261-318)||(28524460-28524517)
chr2 (249-318)||(44860354-44860423)
[»] chr6 (8 HSPs)
chr6 (235-324)||(16488532-16488621)
chr6 (231-324)||(18367864-18367957)
chr6 (276-318)||(26562723-26562765)
chr6 (234-287)||(12696383-12696436)
chr6 (231-318)||(16766731-16766818)
chr6 (231-290)||(34595185-34595244)
chr6 (273-315)||(10294144-10294186)
chr6 (273-317)||(9195734-9195778)
[»] chr5 (11 HSPs)
chr5 (235-324)||(21814289-21814378)
chr5 (231-324)||(6401526-6401619)
chr5 (231-318)||(21542064-21542151)
chr5 (272-315)||(6418069-6418112)
chr5 (271-317)||(11685974-11686019)
chr5 (275-324)||(37328826-37328875)
chr5 (239-290)||(30098995-30099046)
chr5 (253-315)||(18592110-18592172)
chr5 (277-318)||(3966537-3966578)
chr5 (273-318)||(41091237-41091282)
chr5 (274-318)||(12264810-12264854)
[»] scaffold0623 (1 HSPs)
scaffold0623 (231-324)||(5934-6027)
[»] chr4 (9 HSPs)
chr4 (231-324)||(5414110-5414203)
chr4 (68-175)||(32835418-32835524)
chr4 (246-317)||(46083944-46084015)
chr4 (231-318)||(30982816-30982903)
chr4 (264-317)||(19500829-19500882)
chr4 (276-317)||(40742626-40742667)
chr4 (271-318)||(22234868-22234915)
chr4 (233-318)||(903956-904041)
chr4 (261-318)||(38148693-38148750)
[»] chr1 (11 HSPs)
chr1 (231-324)||(25934644-25934737)
chr1 (272-318)||(44482264-44482310)
chr1 (273-318)||(25361920-25361965)
chr1 (272-316)||(34315748-34315792)
chr1 (265-328)||(28273060-28273123)
chr1 (271-318)||(34371747-34371794)
chr1 (231-318)||(47989531-47989618)
chr1 (253-318)||(9828078-9828143)
chr1 (249-314)||(36906035-36906100)
chr1 (272-328)||(9629879-9629935)
chr1 (231-283)||(10577684-10577736)
[»] chr8 (8 HSPs)
chr8 (231-318)||(26902113-26902200)
chr8 (231-324)||(34450970-34451068)
chr8 (253-317)||(15816089-15816153)
chr8 (271-318)||(24362179-24362227)
chr8 (231-290)||(43737760-43737819)
chr8 (271-317)||(12570487-12570532)
chr8 (231-324)||(29510242-29510335)
chr8 (273-317)||(29447479-29447523)
[»] chr7 (6 HSPs)
chr7 (231-318)||(25822689-25822776)
chr7 (261-318)||(4794923-4794980)
chr7 (253-318)||(24339676-24339741)
chr7 (271-318)||(6630890-6630937)
chr7 (271-318)||(26329360-26329407)
chr7 (272-317)||(15902857-15902902)
[»] scaffold0279 (1 HSPs)
scaffold0279 (252-316)||(17839-17903)
[»] scaffold0306 (1 HSPs)
scaffold0306 (231-290)||(13457-13516)
[»] scaffold0152 (1 HSPs)
scaffold0152 (231-290)||(21811-21870)
[»] chr3 (4 HSPs)
chr3 (272-318)||(16192729-16192775)
chr3 (278-318)||(8039820-8039860)
chr3 (231-290)||(13845474-13845533)
chr3 (292-324)||(14028035-14028067)
[»] scaffold0376 (1 HSPs)
scaffold0376 (271-315)||(6349-6393)
[»] scaffold0116 (1 HSPs)
scaffold0116 (293-328)||(9922-9957)
[»] scaffold0036 (1 HSPs)
scaffold0036 (272-318)||(9726-9772)
[»] scaffold0044 (1 HSPs)
scaffold0044 (253-318)||(53214-53279)
[»] scaffold0123 (1 HSPs)
scaffold0123 (254-318)||(44486-44550)
[»] scaffold0003 (1 HSPs)
scaffold0003 (253-317)||(241629-241693)


Alignment Details
Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 14 - 82
Target Start/End: Complemental strand, 19350754 - 19350686
Alignment:
Q  14 cacatgtaacagagacattattgaacaagtttcaaattggtgaatatatttcattattttgcatgattt 82  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  19350754 cacatgtaacagagacattattgaacaagtttcaaattggtgaatatatttcattattctgcatgattt 19350686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 247 - 324
Target Start/End: Original strand, 36096329 - 36096406
Alignment:
Q  247 taaggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataattacactgcatttt 324  Q
    ||||| ||||||||||||||||  |||||||||||||||| ||| |||||| ||||| ||||||||||||||||||||    
T  36096329 taaggcgtgtccccgtgtcagacacgtgtcgtgtccgacatcgacacgacaccgacaaatataattacactgcatttt 36096406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 231 - 327
Target Start/End: Complemental strand, 35056989 - 35056893
Alignment:
Q  231 acggacattccttagataaggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataattacactgcattttatg 327  Q
    ||||||| |||| |||| ||| ||||  ||||||| ||  |||||||||||||||||||| |||||| |||||||||||||||||||| ||| ||||    
T  35056989 acggacactcctcagattaggcgtgtttccgtgtcggacacgtgtcgtgtccgacaccgacacgacaccgacacatataattacactgaattatatg 35056893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 246 - 317
Target Start/End: Original strand, 34784935 - 34785006
Alignment:
Q  246 ataaggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataattacact 317  Q
    |||||| ||||||||||||||||   ||||||||||||| ||||| |||||| |||||||||||||||||||    
T  34784935 ataaggcgtgtccccgtgtcagacaggtgtcgtgtccgataccgacacgacaccgacacatataattacact 34785006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 290
Target Start/End: Complemental strand, 24009405 - 24009346
Alignment:
Q  231 acggacattccttagataaggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccga 290  Q
    ||||||| ||||| ||||||| ||||||||||||||||  ||||||||||||||||||||    
T  24009405 acggacactccttggataaggcgtgtccccgtgtcagacacgtgtcgtgtccgacaccga 24009346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 249 - 318
Target Start/End: Original strand, 12668379 - 12668448
Alignment:
Q  249 aggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataattacactg 318  Q
    |||||||||||  |||||||| |||||||| ||| | ||||| |||||| |||||| |||||||||||||    
T  12668379 aggtgtgtcccaatgtcagatacgtgtcgtatccaataccgacacgacaccgacacttataattacactg 12668448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 271 - 318
Target Start/End: Original strand, 30717508 - 30717555
Alignment:
Q  271 cgtgtcgtgtccgacaccgatacgacatcgacacatataattacactg 318  Q
    |||||||||||||||| ||| ||||||||||||| | |||||||||||    
T  30717508 cgtgtcgtgtccgacaacgacacgacatcgacacttgtaattacactg 30717555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 320
Target Start/End: Original strand, 18054784 - 18054830
Alignment:
Q  274 gtcgtgtccgacaccgatacgacatcgacacatataattacactgca 320  Q
    ||||||| ||||||||| |||||| | ||||||||||||||||||||    
T  18054784 gtcgtgttcgacaccgacacgacaccaacacatataattacactgca 18054830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 318
Target Start/End: Complemental strand, 28524517 - 28524460
Alignment:
Q  261 gtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataattacactg 318  Q
    ||||||||  ||||| |||||||||||| | || ||| ||||||||||||||||||||    
T  28524517 gtgtcagacacgtgttgtgtccgacaccaacacaacaacgacacatataattacactg 28524460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 318
Target Start/End: Complemental strand, 44860423 - 44860354
Alignment:
Q  249 aggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataattacactg 318  Q
    |||||||||||  |||| ||  | |||||||||| ||||| | |||||| ||||||||||||||||||||    
T  44860423 aggtgtgtcccgatgtcggacacatgtcgtgtccaacaccaacacgacaccgacacatataattacactg 44860354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 235 - 324
Target Start/End: Original strand, 16488532 - 16488621
Alignment:
Q  235 acattccttagataaggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataattacactgcatttt 324  Q
    ||||||||| ||||||| ||||||||||| ||||  |||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  16488532 acattccttggataaggcgtgtccccgtgccagacacgtgtcgtgtccgacaccgacacgacaccgacacatataattacactgcatttt 16488621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 231 - 324
Target Start/End: Complemental strand, 18367957 - 18367864
Alignment:
Q  231 acggacattccttagataaggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataattacactgcatttt 324  Q
    ||||||| ||||| ||||||| ||||||||||||||||   |||||||||| |||||||| |||||| ||||||||||||||||||||||||||    
T  18367957 acggacactccttggataaggcgtgtccccgtgtcagacatgtgtcgtgtctgacaccgacacgacaccgacacatataattacactgcatttt 18367864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 276 - 318
Target Start/End: Complemental strand, 26562765 - 26562723
Alignment:
Q  276 cgtgtccgacaccgatacgacatcgacacatataattacactg 318  Q
    ||||| ||||||||| |||||||||||||||||||||||||||    
T  26562765 cgtgttcgacaccgacacgacatcgacacatataattacactg 26562723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 234 - 287
Target Start/End: Complemental strand, 12696436 - 12696383
Alignment:
Q  234 gacattccttagataaggtgtgtccccgtgtcagatgcgtgtcgtgtccgacac 287  Q
    |||| ||||| ||||||||||||||| ||||||||  |||||||||||||||||    
T  12696436 gacactccttggataaggtgtgtcccggtgtcagacacgtgtcgtgtccgacac 12696383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 231 - 318
Target Start/End: Complemental strand, 16766818 - 16766731
Alignment:
Q  231 acggacattccttagataaggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataattacactg 318  Q
    |||||||||| |  ||| ||| ||||||| ||||| ||  ||||| |||||||||||||| |||||| |||||| | |||||||||||    
T  16766818 acggacattcttcggattaggcgtgtcccggtgtcggacacgtgttgtgtccgacaccgacacgacaccgacacttgtaattacactg 16766731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 231 - 290
Target Start/End: Complemental strand, 34595244 - 34595185
Alignment:
Q  231 acggacattccttagataaggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccga 290  Q
    ||||||| ||||  ||| ||||||||||| ||||||||  ||||||||||||||||||||    
T  34595244 acggacactcctcggattaggtgtgtcccggtgtcagacacgtgtcgtgtccgacaccga 34595185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 315
Target Start/End: Complemental strand, 10294186 - 10294144
Alignment:
Q  273 tgtcgtgtccgacaccgatacgacatcgacacatataattaca 315  Q
    |||||||||||||||| | |||||| |||||||||||||||||    
T  10294186 tgtcgtgtccgacaccaacacgacaccgacacatataattaca 10294144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 317
Target Start/End: Original strand, 9195734 - 9195778
Alignment:
Q  273 tgtcgtgtccgacaccgatacgacatcgacacatataattacact 317  Q
    ||||||||| |||||| | |||||| |||||||||||||||||||    
T  9195734 tgtcgtgtcagacacctacacgacaccgacacatataattacact 9195778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 235 - 324
Target Start/End: Complemental strand, 21814378 - 21814289
Alignment:
Q  235 acattccttagataaggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataattacactgcatttt 324  Q
    ||||||||| ||||||| ||||||||||| ||||  |||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  21814378 acattccttggataaggcgtgtccccgtgccagacacgtgtcgtgtccgacaccgacacgacaccgacacatataattacactgcatttt 21814289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 231 - 324
Target Start/End: Complemental strand, 6401619 - 6401526
Alignment:
Q  231 acggacattccttagataaggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataattacactgcatttt 324  Q
    ||||||| ||||| ||||||| || |||||||||||||  ||||||||||||||||| || |||||| |||||||||||||||||||| |||||    
T  6401619 acggacactccttggataaggcgtatccccgtgtcagacacgtgtcgtgtccgacactgacacgacaccgacacatataattacactgtatttt 6401526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 318
Target Start/End: Complemental strand, 21542151 - 21542064
Alignment:
Q  231 acggacattccttagataaggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataattacactg 318  Q
    ||||||||||||| |||  || ||||||| ||||| ||  |||||||||||||||||||| |||||| |||||| | |||||||||||    
T  21542151 acggacattccttggattcggcgtgtcccggtgtcggacacgtgtcgtgtccgacaccgacacgacaccgacacttgtaattacactg 21542064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 272 - 315
Target Start/End: Complemental strand, 6418112 - 6418069
Alignment:
Q  272 gtgtcgtgtccgacaccgatacgacatcgacacatataattaca 315  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||    
T  6418112 gtgtcgtgttcgacaccgatacgacgtcgacacatataattaca 6418069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 271 - 317
Target Start/End: Complemental strand, 11686019 - 11685974
Alignment:
Q  271 cgtgtcgtgtccgacaccgatacgacatcgacacatataattacact 317  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||    
T  11686019 cgtgtcgtgtccgacaccga-acgacaccgacacatataattacact 11685974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 275 - 324
Target Start/End: Original strand, 37328826 - 37328875
Alignment:
Q  275 tcgtgtccgacaccgatacgacatcgacacatataattacactgcatttt 324  Q
    |||||||||||||||| |||||| |||||||| ||||||||||| |||||    
T  37328826 tcgtgtccgacaccgacacgacaccgacacatgtaattacactgaatttt 37328875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 239 - 290
Target Start/End: Original strand, 30098995 - 30099046
Alignment:
Q  239 tccttagataaggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccga 290  Q
    ||||| ||||||| ||||||||||||||||  |||||||| |||||||||||    
T  30098995 tccttggataaggcgtgtccccgtgtcagacacgtgtcgtatccgacaccga 30099046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 315
Target Start/End: Complemental strand, 18592172 - 18592110
Alignment:
Q  253 gtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataattaca 315  Q
    |||||||  |||||||  ||||| |||||||||||||| |||||| || ||||||||||||||    
T  18592172 gtgtcccgatgtcagacacgtgttgtgtccgacaccgacacgacaccggcacatataattaca 18592110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 318
Target Start/End: Complemental strand, 3966578 - 3966537
Alignment:
Q  277 gtgtccgacaccgatacgacatcgacacatataattacactg 318  Q
    ||||||||||| || |||||| ||||||||||||||||||||    
T  3966578 gtgtccgacactgacacgacaccgacacatataattacactg 3966537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 318
Target Start/End: Original strand, 41091237 - 41091282
Alignment:
Q  273 tgtcgtgtccgacaccgatacgacatcgacacatataattacactg 318  Q
    ||||| ||||||||  || |||||||||||||||||||||||||||    
T  41091237 tgtcgcgtccgacattgacacgacatcgacacatataattacactg 41091282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 318
Target Start/End: Original strand, 12264810 - 12264854
Alignment:
Q  274 gtcgtgtccgacaccgatacgacatcgacacatataattacactg 318  Q
    ||||| || |||||||||| ||||| |||||||||||||||||||    
T  12264810 gtcgtatctgacaccgatatgacattgacacatataattacactg 12264854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0623 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0623
Description:

Target: scaffold0623; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 231 - 324
Target Start/End: Original strand, 5934 - 6027
Alignment:
Q  231 acggacattccttagataaggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataattacactgcatttt 324  Q
    ||||||| ||||| ||||||| ||||| | ||||||||  |||||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  5934 acggacactccttggataaggcgtgtctctgtgtcagacacgtgtcgtgttcgacaccgatacgacaccgacacatataattacactgcatttt 6027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 231 - 324
Target Start/End: Original strand, 5414110 - 5414203
Alignment:
Q  231 acggacattccttagataaggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataattacactgcatttt 324  Q
    ||||||| ||||| ||||||||||||||| ||||||||  ||||||||||||||||| || |||||| ||| ||||||||||||||||||||||    
T  5414110 acggacactccttggataaggtgtgtccctgtgtcagacacgtgtcgtgtccgacactgacacgacaccgatacatataattacactgcatttt 5414203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 68 - 175
Target Start/End: Original strand, 32835418 - 32835524
Alignment:
Q  68 tattttgcatgattttcaaatattttgtgttgttaatttaacttttagctaattatttagttacataaactaattgtttagctgaattgctttgttttat 167  Q
    ||||||| || ||||| |||||| ||| |||||||||||||||||||||||||||||||  || |  ||||| |||| ||||||||||||||| |||| |    
T  32835418 tattttgaataattttaaaatatattgcgttgttaatttaacttttagctaattattta-ataaagtaactatttgtctagctgaattgctttctttttt 32835516  T
Q  168 ggcaaaat 175  Q
    ||||||||    
T  32835517 ggcaaaat 32835524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 246 - 317
Target Start/End: Original strand, 46083944 - 46084015
Alignment:
Q  246 ataaggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataattacact 317  Q
    |||||| ||||||||| ||||||  |||||||||||||| || || |||||| |||||||||||||||||||    
T  46083944 ataaggcgtgtccccgcgtcagacacgtgtcgtgtccgatactgacacgacaccgacacatataattacact 46084015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 231 - 318
Target Start/End: Original strand, 30982816 - 30982903
Alignment:
Q  231 acggacattccttagataaggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataattacactg 318  Q
    ||||||| || || ||| ||| ||||||| ||||| ||  ||||||||||| |||||||| |||||| |||||| |||||||||||||    
T  30982816 acggacactctttggattaggcgtgtcccggtgtcggacacgtgtcgtgtctgacaccgacacgacaccgacacttataattacactg 30982903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 264 - 317
Target Start/End: Original strand, 19500829 - 19500882
Alignment:
Q  264 tcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataattacact 317  Q
    ||||| ||||||||||||||||||||| |||||| |  ||||||||||||||||    
T  19500829 tcagaggcgtgtcgtgtccgacaccgacacgacaccatcacatataattacact 19500882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 276 - 317
Target Start/End: Complemental strand, 40742667 - 40742626
Alignment:
Q  276 cgtgtccgacaccgatacgacatcgacacatataattacact 317  Q
    |||||| |||||||| ||||||||||||||||||||||||||    
T  40742667 cgtgtctgacaccgacacgacatcgacacatataattacact 40742626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 271 - 318
Target Start/End: Original strand, 22234868 - 22234915
Alignment:
Q  271 cgtgtcgtgtccgacaccgatacgacatcgacacatataattacactg 318  Q
    ||||||||||| |||||||| |||||| ||||||||| ||||||||||    
T  22234868 cgtgtcgtgtcagacaccgacacgacaccgacacatagaattacactg 22234915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 318
Target Start/End: Complemental strand, 904041 - 903956
Alignment:
Q  233 ggacattccttagataaggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataattacactg 318  Q
    ||||||| ||| ||| || |||||||| ||||| ||  | |||||||||| |||||||||||| |  || ||||||||||||||||    
T  904041 ggacatttcttggattagatgtgtcccagtgtcggacacatgtcgtgtccaacaccgatacgatactgatacatataattacactg 903956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 318
Target Start/End: Original strand, 38148693 - 38148750
Alignment:
Q  261 gtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataattacactg 318  Q
    ||||||||| |||||||||||| ||||| | ||||||||||||  || ||||||||||    
T  38148693 gtgtcagatacgtgtcgtgtccaacaccaacacgacatcgacatttaaaattacactg 38148750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 6e-22; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 231 - 324
Target Start/End: Complemental strand, 25934737 - 25934644
Alignment:
Q  231 acggacattccttagataaggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataattacactgcatttt 324  Q
    ||||||| ||||| ||||||| || |||||||||||||  |||||||||||||||||||| |||| | |||||||||||||||||||| |||||    
T  25934737 acggacactccttggataaggcgtatccccgtgtcagacacgtgtcgtgtccgacaccgacacgataccgacacatataattacactgtatttt 25934644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 272 - 318
Target Start/End: Complemental strand, 44482310 - 44482264
Alignment:
Q  272 gtgtcgtgtccgacaccgatacgacatcgacacatataattacactg 318  Q
    ||||||||||||||||||| |||||| ||||||||||||||||||||    
T  44482310 gtgtcgtgtccgacaccgacacgacaccgacacatataattacactg 44482264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 273 - 318
Target Start/End: Complemental strand, 25361965 - 25361920
Alignment:
Q  273 tgtcgtgtccgacaccgatacgacatcgacacatataattacactg 318  Q
    |||||||||||||||||| ||||||  |||||||||||||||||||    
T  25361965 tgtcgtgtccgacaccgacacgacactgacacatataattacactg 25361920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 316
Target Start/End: Complemental strand, 34315792 - 34315748
Alignment:
Q  272 gtgtcgtgtccgacaccgatacgacatcgacacatataattacac 316  Q
    ||||||||| |||||||||||||| | ||||||||||||||||||    
T  34315792 gtgtcgtgttcgacaccgatacgataccgacacatataattacac 34315748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 265 - 328
Target Start/End: Original strand, 28273060 - 28273123
Alignment:
Q  265 cagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataattacactgcattttatga 328  Q
    ||||| |||||||||||||||| ||||| |||| |||||| | ||||||||||| ||| |||||    
T  28273060 cagatacgtgtcgtgtccgacatcgataggacaccgacacttgtaattacactgaattatatga 28273123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 271 - 318
Target Start/End: Complemental strand, 34371794 - 34371747
Alignment:
Q  271 cgtgtcgtgtccgacaccgatacgacatcgacacatataattacactg 318  Q
    |||||||| ||||||||| | |||||| ||||||||||||||||||||    
T  34371794 cgtgtcgtatccgacaccaacacgacaccgacacatataattacactg 34371747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 231 - 318
Target Start/End: Complemental strand, 47989618 - 47989531
Alignment:
Q  231 acggacattccttagataaggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataattacactg 318  Q
    ||||||| ||||  ||| ||| |||||||  |||||||   ||||||||||||||||||| |||||| |||||| | |||||||||||    
T  47989618 acggacactcctcggattaggcgtgtcccgatgtcagacatgtgtcgtgtccgacaccgacacgacaccgacacttgtaattacactg 47989531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 318
Target Start/End: Complemental strand, 9828143 - 9828078
Alignment:
Q  253 gtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataattacactg 318  Q
    ||||||| ||||| ||  ||||||||||| ||||| || |||||| ||||||||| ||||||||||    
T  9828143 gtgtcccggtgtcggacacgtgtcgtgtctgacacggacacgacaccgacacataaaattacactg 9828078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 314
Target Start/End: Complemental strand, 36906100 - 36906035
Alignment:
Q  249 aggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataattac 314  Q
    ||||||||||| |||||||| ||| |||||||||||||| || || ||  | ||||||||||||||    
T  36906100 aggtgtgtcccagtgtcagacgcgggtcgtgtccgacactgacacaacgccaacacatataattac 36906035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 328
Target Start/End: Original strand, 9629879 - 9629935
Alignment:
Q  272 gtgtcgtgtccgacaccgatacgacatcgacacatataattacactgcattttatga 328  Q
    ||||||||||||||| ||| |||||| |||||| |||||| |||||| ||| |||||    
T  9629879 gtgtcgtgtccgacatcgacacgacaccgacacttataatcacactgaattatatga 9629935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 283
Target Start/End: Original strand, 10577684 - 10577736
Alignment:
Q  231 acggacattccttagataaggtgtgtccccgtgtcagatgcgtgtcgtgtccg 283  Q
    ||||||| ||||| ||||||| ||||||||||||||||  || ||||||||||    
T  10577684 acggacactccttggataaggcgtgtccccgtgtcagacacgcgtcgtgtccg 10577736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 231 - 318
Target Start/End: Original strand, 26902113 - 26902200
Alignment:
Q  231 acggacattccttagataaggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataattacactg 318  Q
    ||||||| |||| |||||||| ||||||||||| ||||  |||||||||||||||||  |||||||| ||||||||||||||||||||    
T  26902113 acggacactcctcagataaggcgtgtccccgtgccagacacgtgtcgtgtccgacactcatacgacaccgacacatataattacactg 26902200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 231 - 324
Target Start/End: Original strand, 34450970 - 34451068
Alignment:
Q  231 acggacattccttagataaggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacat-----cgacacatataattacactgcatttt 324  Q
    ||||||| ||||| ||||||| ||||||||||||||||  |||||||||||||||||||| ||||||      ||||||||||||||||||||||||||    
T  34450970 acggacactccttggataaggcgtgtccccgtgtcagacacgtgtcgtgtccgacaccgacacgacacgacaccgacacatataattacactgcatttt 34451068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 253 - 317
Target Start/End: Original strand, 15816089 - 15816153
Alignment:
Q  253 gtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataattacact 317  Q
    ||||||| ||||| ||| |||||||||||||||||| | |||||| |||||| ||||||||||||    
T  15816089 gtgtcccggtgtcggattcgtgtcgtgtccgacaccaacacgacaccgacacttataattacact 15816153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 318
Target Start/End: Original strand, 24362179 - 24362227
Alignment:
Q  271 cgtgtcgtgtccg-acaccgatacgacatcgacacatataattacactg 318  Q
    ||||||||||||| ||||||| ||||||| |||||||||||||||||||    
T  24362179 cgtgtcgtgtccggacaccgacacgacattgacacatataattacactg 24362227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 231 - 290
Target Start/End: Original strand, 43737760 - 43737819
Alignment:
Q  231 acggacattccttagataaggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccga 290  Q
    ||||||| ||||| ||||||| || |||||||||||||  | ||||||||||||||||||    
T  43737760 acggacactccttggataaggcgtatccccgtgtcagacacctgtcgtgtccgacaccga 43737819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 317
Target Start/End: Original strand, 12570487 - 12570532
Alignment:
Q  271 cgtgtcgtgtccgacaccgatacgacatcgacacatataattacact 317  Q
    ||||| ||||| ||||||||||| |||||||||||||||||||||||    
T  12570487 cgtgtagtgtctgacaccgatac-acatcgacacatataattacact 12570532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 324
Target Start/End: Original strand, 29510242 - 29510335
Alignment:
Q  231 acggacattccttagataaggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataattacactgcatttt 324  Q
    ||||||| ||||  ||| ||||||||||| ||||| ||  || ||||||||||||||||| || ||| |||||| | |||||| |||| |||||    
T  29510242 acggacactcctcggattaggtgtgtcccggtgtcggacacgcgtcgtgtccgacaccgacactacaccgacacttgtaattatactgaatttt 29510335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 317
Target Start/End: Complemental strand, 29447523 - 29447479
Alignment:
Q  273 tgtcgtgtccgacaccgatacgacatcgacacatataattacact 317  Q
    ||||||||| |||||||| |||||| | |||||||||||||||||    
T  29447523 tgtcgtgtctgacaccgacacgacaccaacacatataattacact 29447479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 318
Target Start/End: Complemental strand, 25822776 - 25822689
Alignment:
Q  231 acggacattccttagataaggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataattacactg 318  Q
    ||||||| ||||||||| |||  ||||||  |||||||  |||||||||||||| |||||||||||| |||||| | |||||||||||    
T  25822776 acggacactccttagattaggcatgtcccgatgtcagacacgtgtcgtgtccgataccgatacgacaccgacacttgtaattacactg 25822689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 261 - 318
Target Start/End: Complemental strand, 4794980 - 4794923
Alignment:
Q  261 gtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataattacactg 318  Q
    ||||||||| ||||||||||||||||||||||||  | |||||| |||||||||||||    
T  4794980 gtgtcagatacgtgtcgtgtccgacaccgatacggtaccgacacttataattacactg 4794923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 253 - 318
Target Start/End: Complemental strand, 24339741 - 24339676
Alignment:
Q  253 gtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataattacactg 318  Q
    ||||||| ||||| ||| |||||||||||||||||||| |||||| |||||| | |||||||||||    
T  24339741 gtgtcccggtgtcggatacgtgtcgtgtccgacaccgacacgacaccgacacttgtaattacactg 24339676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 271 - 318
Target Start/End: Original strand, 6630890 - 6630937
Alignment:
Q  271 cgtgtcgtgtccgacaccgatacgacatcgacacatataattacactg 318  Q
    ||||| |||||||||||| | |||||||||||||||||||||||||||    
T  6630890 cgtgttgtgtccgacaccaacacgacatcgacacatataattacactg 6630937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 271 - 318
Target Start/End: Original strand, 26329360 - 26329407
Alignment:
Q  271 cgtgtcgtgtccgacaccgatacgacatcgacacatataattacactg 318  Q
    ||||||||||| |||||||| |||||  ||||||||||||||||||||    
T  26329360 cgtgtcgtgtctgacaccgacacgacgccgacacatataattacactg 26329407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 317
Target Start/End: Complemental strand, 15902902 - 15902857
Alignment:
Q  272 gtgtcgtgtccgacaccgatacgacatcgacacatataattacact 317  Q
    ||||||||||||| ||||| || ||| |||||||||||||||||||    
T  15902902 gtgtcgtgtccgataccgacacaacaccgacacatataattacact 15902857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0279 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 252 - 316
Target Start/End: Original strand, 17839 - 17903
Alignment:
Q  252 tgtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataattacac 316  Q
    |||||||| ||||| ||  |||||||||||| |||||||||||||| || |||||||||||||||    
T  17839 tgtgtcccagtgtcggacacgtgtcgtgtccaacaccgatacgacaccgtcacatataattacac 17903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 231 - 290
Target Start/End: Complemental strand, 13516 - 13457
Alignment:
Q  231 acggacattccttagataaggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccga 290  Q
    ||||||| ||||| ||| ||||||||||  |||||||| |||||||||||||||||||||    
T  13516 acggacactccttggattaggtgtgtcctagtgtcagacgcgtgtcgtgtccgacaccga 13457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 231 - 290
Target Start/End: Original strand, 21811 - 21870
Alignment:
Q  231 acggacattccttagataaggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccga 290  Q
    ||||||| ||||| ||| ||||||||||  |||||||| |||||||||||||||||||||    
T  21811 acggacactccttggattaggtgtgtcctagtgtcagacgcgtgtcgtgtccgacaccga 21870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 318
Target Start/End: Original strand, 16192729 - 16192775
Alignment:
Q  272 gtgtcgtgtccgacaccgatacgacatcgacacatataattacactg 318  Q
    |||||||||| |||||||| |||||||| ||||||||||||||||||    
T  16192729 gtgtcgtgtctgacaccgacacgacatcaacacatataattacactg 16192775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 318
Target Start/End: Original strand, 8039820 - 8039860
Alignment:
Q  278 tgtccgacaccgatacgacatcgacacatataattacactg 318  Q
    ||||||||||||| |||||| ||||||||||||||||||||    
T  8039820 tgtccgacaccgacacgacaccgacacatataattacactg 8039860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 231 - 290
Target Start/End: Original strand, 13845474 - 13845533
Alignment:
Q  231 acggacattccttagataaggtgtgtccccgtgtcagatgcgtgtcgtgtccgacaccga 290  Q
    ||||||| ||||| ||||||| ||||| ||||||||||  ||| ||||||||||||||||    
T  13845474 acggacactccttggataaggcgtgtctccgtgtcagacacgtctcgtgtccgacaccga 13845533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 324
Target Start/End: Complemental strand, 14028067 - 14028035
Alignment:
Q  292 acgacatcgacacatataattacactgcatttt 324  Q
    |||||| ||||||||||||||||||||||||||    
T  14028067 acgacaccgacacatataattacactgcatttt 14028035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0376 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0376
Description:

Target: scaffold0376; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 315
Target Start/End: Complemental strand, 6393 - 6349
Alignment:
Q  271 cgtgtcgtgtccgacaccgatacgacatcgacacatataattaca 315  Q
    ||||||||| || |||||||||||||| |||||||||||||||||    
T  6393 cgtgtcgtgccccacaccgatacgacaccgacacatataattaca 6349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 293 - 328
Target Start/End: Complemental strand, 9957 - 9922
Alignment:
Q  293 cgacatcgacacatataattacactgcattttatga 328  Q
    ||||| ||||||||||||||||||||||||||||||    
T  9957 cgacaccgacacatataattacactgcattttatga 9922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 318
Target Start/End: Original strand, 9726 - 9772
Alignment:
Q  272 gtgtcgtgtccgacaccgatacgacatcgacacatataattacactg 318  Q
    |||||||||| |||||| | |||||| ||||||||||||||||||||    
T  9726 gtgtcgtgtctgacaccaacacgacaccgacacatataattacactg 9772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 318
Target Start/End: Complemental strand, 53279 - 53214
Alignment:
Q  253 gtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataattacactg 318  Q
    ||||||| ||||| ||  |||||| ||||||||||||| ||| || |||||| |||||||||||||    
T  53279 gtgtcccggtgtcggacacgtgtcatgtccgacaccgacacggcaccgacacttataattacactg 53214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 318
Target Start/End: Original strand, 44486 - 44550
Alignment:
Q  254 tgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataattacactg 318  Q
    |||||| ||||| ||  ||||| |||||| ||||||| |||| | ||||||||||||||||||||    
T  44486 tgtcccagtgtcggacacgtgttgtgtccaacaccgacacgataccgacacatataattacactg 44550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 317
Target Start/End: Complemental strand, 241693 - 241629
Alignment:
Q  253 gtgtccccgtgtcagatgcgtgtcgtgtccgacaccgatacgacatcgacacatataattacact 317  Q
    ||||||| ||||| ||  |||||||||||||||||| | |||||| ||||||  |||||||||||    
T  241693 gtgtcccggtgtcggacacgtgtcgtgtccgacaccaacacgacaccgacactcataattacact 241629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University