View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11355_low_2 (Length: 331)
Name: NF11355_low_2
Description: NF11355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11355_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 9 - 316
Target Start/End: Original strand, 24215595 - 24215902
Alignment:
| Q |
9 |
aatcacaaagataaaacgaaccaaaacacaatacacacgaataattgaaatcaagtctgacgagaatagagacgacgaccgatctcaaatgaaacaaaag |
108 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
24215595 |
aatcacaaagataaaacgatacaaaacacaatacacacgaataattgaaatcaagtctgacgagaatagagacgacaaccgatctcaaatgaaacaaaag |
24215694 |
T |
|
| Q |
109 |
catcaacagttgcatacttaacctgatcagcactaagcaactgactatcccacctactcatagaaatgttctgcggcttctcaacaatcttcccaagcag |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
24215695 |
catcaacagttgcatacttaacctgatcagcactaagcaactgactatcccacctactcatagaaatgttatgcggcttctcaacaatcttcccaagcag |
24215794 |
T |
|
| Q |
209 |
gcatgccgcaaatgttttaagctcactactccttagtatctctcgatcacccaacacctgtgcagcaaggttacgcaaatcaacataattcgccaagtgg |
308 |
Q |
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|||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
24215795 |
gcattctgcaaatgttttaagctcactactccttagtatctctcgatcacccaacacctgggaagcaaggttacgcaaatcaacataattcgccaagtgg |
24215894 |
T |
|
| Q |
309 |
agaccatg |
316 |
Q |
| |
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|||||||| |
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| T |
24215895 |
agaccatg |
24215902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 70 - 174
Target Start/End: Original strand, 24209902 - 24210006
Alignment:
| Q |
70 |
gagaatagagacgacgaccgatctcaaatgaaacaaaagcatcaacagttgcatacttaacctgatcagcactaagcaactgactatcccacctactcat |
169 |
Q |
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||||||||||||||||||| |||||||| |||||||||||||||||||||||| | ||||||||| |||||| ||| | || |||||||||||||||| |
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| T |
24209902 |
gagaatagagacgacgaccaatctcaaaggaaacaaaagcatcaacagttgcaaatttaacctgaatagcactgagccaaggattatcccacctactcat |
24210001 |
T |
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| Q |
170 |
agaaa |
174 |
Q |
| |
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|||| |
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| T |
24210002 |
cgaaa |
24210006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 9 - 146
Target Start/End: Original strand, 24224408 - 24224547
Alignment:
| Q |
9 |
aatcacaaagataaaacgaaccaaaacacaatacacac--gaataattgaaatcaagtctgacgagaatagagacgacgaccgatctcaaatgaaacaaa |
106 |
Q |
| |
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||||||||||||||||| || | ||||||| ||| || |||| ||||||||||| |||| ||||| ||||| ||||| |||||||| |||||||| |
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| T |
24224408 |
aatcacaaagataaaacaaaaccaaacacagaacatacatgaatcattgaaatcaattctgctttgaataaagacggcgaccaatctcaaacgaaacaaa |
24224507 |
T |
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| Q |
107 |
agcatcaacagttgcatacttaacctgatcagcactaagc |
146 |
Q |
| |
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|||||||||||| ||||| |||||||||||| || ||||| |
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| T |
24224508 |
agcatcaacagtagcatatttaacctgatcaacattaagc |
24224547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 65 - 205
Target Start/End: Complemental strand, 24229652 - 24229512
Alignment:
| Q |
65 |
ctgacgagaatagagacgacgaccgatctcaaatgaaacaaaagcatcaacagttgcatacttaacctgatcagcactaagcaactgactatcccaccta |
164 |
Q |
| |
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|||| ||||||| ||||||||| | |||||||| |||| ||||||||||||||| ||||||||||||||||| | ||||| || ||||||||||| |
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| T |
24229652 |
ctgatgagaataaagacgacgagcaatctcaaaggaaagaaaagcatcaacagtagcatacttaacctgatcccaatcaagcattggattatcccaccta |
24229553 |
T |
|
| Q |
165 |
ctcatagaaatgttctgcggcttctcaacaatcttcccaag |
205 |
Q |
| |
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||| | | ||| || |||||||||||||||||||||||| |
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| T |
24229552 |
ctcctcgtaatcctcgacggcttctcaacaatcttcccaag |
24229512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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