View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11356_high_1 (Length: 791)
Name: NF11356_high_1
Description: NF11356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11356_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 572; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 572; E-Value: 0
Query Start/End: Original strand, 152 - 751
Target Start/End: Original strand, 48170317 - 48170916
Alignment:
| Q |
152 |
taatataaactagagagaatgacagtagaatagaaaggcaaggcaactttctgcacgcaaaacagaacaacatctaccaaaaaacgaagatcaagcccat |
251 |
Q |
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| T |
48170317 |
taatataaactagagagaatgacagtagaatagaaaggcaaggcaactttctgcacgcaaaacagaacaacatctaccaaaaaacgaagatcaagcccat |
48170416 |
T |
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| Q |
252 |
aattatatttatgattcgtgaaattagcctcataaatgaagaagaaacagcaacgagttaacnnnnnnnnttaactggagctcattgcagaagagtccag |
351 |
Q |
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| T |
48170417 |
aattatatttatgattcgtgaaattagcctcataaatgaagaagaaacagcaatgagttaacaaaaaaaattaactggagctcattgcagaagagtccag |
48170516 |
T |
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| Q |
352 |
atggatattcacatcattaaaattacctccacagtgaaataatccttaagatacacgtctcatgctacttatttcttcatatctttccagcaagttagag |
451 |
Q |
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| T |
48170517 |
atggatattcacatcattaaaattacctccacagtgaaataatccttaagatacacgtctcatgctacttatttcttcatatctttccagcaagttagag |
48170616 |
T |
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| Q |
452 |
aagtgaacatgagaaaattacttgagccaatgatcttgcattagccttctttatagtgatgctgctaaacaaacttatcatattggataaaataaaccga |
551 |
Q |
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| T |
48170617 |
aagtgaacatgagaaaattacttgagccaatgatcttgcattagccttctttatagtgatgctgctaaacaaacttatcatattggataaaataaaccga |
48170716 |
T |
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| Q |
552 |
tataatctatcataactactcaaacaaattttcaatggcttgttgtatatctatctaactagttgaattgctagaataaaatagctatttgagtttctga |
651 |
Q |
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| T |
48170717 |
tataatctatcataactactcaaacaaattttcaatggcttgttgtatatctatctaactagttgaattgctagaataaaatagctatttgagtttctga |
48170816 |
T |
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| Q |
652 |
tcaataggacagacaatatataagatttgtttcctgtatgataattatatgtaattgtgacaacagtaataagaaataatataatacaaacaagggtcac |
751 |
Q |
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| T |
48170817 |
tcaataggacagacaatatataagatttgtttcctgtatgataattatatgtaattgtgacaacagtaataagaaataatataatacaaacaagggtcac |
48170916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 18 - 160
Target Start/End: Original strand, 48168706 - 48168849
Alignment:
| Q |
18 |
aataatattatgatatacaattagattgaactgaatagtgaataacctgtttgattgtcctaatatatagatctctacccatctcctggtacatggata- |
116 |
Q |
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| T |
48168706 |
aataatattatgatatacaattagattgaactgaatagtgaataacctgtttgattgtcctaatatatagatctctacccatctcctggtacatggatat |
48168805 |
T |
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| Q |
117 |
gcatgttcgtaagaaactcttgtattttcttataataatataaa |
160 |
Q |
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| T |
48168806 |
gcatgttcgtaagaaactcttgtattttcttataataatataaa |
48168849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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