View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11356_high_12 (Length: 491)
Name: NF11356_high_12
Description: NF11356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11356_high_12 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
| [»] chr3 (3 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 372; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 20 - 491
Target Start/End: Complemental strand, 24532705 - 24532217
Alignment:
| Q |
20 |
ggttatccaatgttgcacttacttttgaagctagcattattgttgcttgtggcgagtgcaaatgatgaaagaagtttctctag-----acat-------- |
106 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |
|
|
| T |
24532705 |
ggttatccaatgtcgcacttagttttgaagctagcattattgttgcttgtggcgagtgcaaatgatgaaagaagtttctctactagaaacgttatggata |
24532606 |
T |
|
| Q |
107 |
----aatgcgcaaccatatggaagatacatattgttaatgacggattgataacatacataatattcgatattacagtgtctacatttctctaattgtttt |
202 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
24532605 |
gtcaaatgtgcaaccatatggaagatatatattgttaatgatggattgataacatacataatattcgatattaaggtgtctacatttctctaattgtttt |
24532506 |
T |
|
| Q |
203 |
gcatagacataatggtgtcatcatttattggttatgaatttatgtatttttgtataaatattcatgatgagcaaccttgatcccacttaacaaaatttct |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24532505 |
gcatagacataatggtgtcatcatttattggttatgaatttatgtatttctgtataaatattcatgatgagcaaccttgatcccacttaacaaaatttct |
24532406 |
T |
|
| Q |
303 |
ggattcgatgctgattatgtcgacagacacattgaaagggccatcacccagacccaattcctcaaacaagaccaatgtgtttacatctttattaaagaat |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24532405 |
ggattcgatgctgattatgtcgacagacacattgaaagggcctttacccagacccaattcctcaaacaagaccaatgtgtttacatctttattaaagaat |
24532306 |
T |
|
| Q |
403 |
ggccttggcactgcgtaatacctaaaagatgaattttcaccaagccgataccttccaatacattgaccattaacctatgcttctcctct |
491 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
24532305 |
ggccttggcactgcgtaatacctaaaagatgaattttcaccaagccgataccttccaatacattgaccattaacccatgcttttcctct |
24532217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 20 - 491
Target Start/End: Complemental strand, 24526034 - 24525545
Alignment:
| Q |
20 |
ggttatccaatgttgcacttacttttgaagctagcattattgttgcttgtggcgagtgcaaatgatgaaagaagtttctctag-----acat-------- |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || | |
|
|
| T |
24526034 |
ggttatccaatgttgcacttacttttgaagctagcattattgttgcttgtggcgagtgcaaatgatgaaagaagtttttctactagaaacgttatggata |
24525935 |
T |
|
| Q |
107 |
----aatgcgcaaccatatggaagatacatattgttaatgacggattgataacatacataatattcgatattacagtgtctacatttctctaattgtttt |
202 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
24525934 |
gtcaaatgcgcaaccatatggaagatatatattgttaatgacggattgataacatacataatattcgatattaaggtgtctacatttctctaattatttt |
24525835 |
T |
|
| Q |
203 |
gcatagacataatggtgtcatcatttattggttatgaatttatgtat-ttttgtataaatattcatgatgagcaaccttgatcccacttaacaaaatttc |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24525834 |
gcatagacataatggtgtcatcatttattggttatgaatttatgtatattttttataaatattcatgatgagcaaccttgatcccacttaacaaaatttc |
24525735 |
T |
|
| Q |
302 |
tggattcgatgctgattatgtcgacagacacattgaaagggccatcacccagacccaattcctcaaacaagaccaatgtgtttacatctttattaaagaa |
401 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24525734 |
tggattcgatgctgattatgtcgacagacacattgaaagggccttcacccagacccaattcctcaaacaagaccaatgtgtttacatctttattaaagaa |
24525635 |
T |
|
| Q |
402 |
tggccttggcactgcgtaatacctaaaagatgaattttcaccaagccgataccttccaatacattgaccattaacctatgcttctcctct |
491 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||| |||||| |
|
|
| T |
24525634 |
tggccttggcactgcgtaatacctaaaagatgaattttcaccaagctgataccttccaatactttgaccattaacccatgcttttcctct |
24525545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 196; Significance: 1e-106; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 22 - 491
Target Start/End: Complemental strand, 290991 - 290493
Alignment:
| Q |
22 |
ttatccaatgttgcacttacttttgaagctagcattattgttgcttgtggcgagtgcaaatgatgaaagaagttt----ctctagacata-----atgcg |
112 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||| || || ||| ||| | |
|
|
| T |
290991 |
ttatccaatgatgcacttacttttgaagctagcattattattgcgtgtggcgagtgcaaatgaagaaagaagttagaaactttatggatagtcaaatggg |
290892 |
T |
|
| Q |
113 |
caaccatatggaagatacatattgttaatgacggattgataacatacat-------------------aatattcgatattacagtgtctacatttctct |
193 |
Q |
| |
|
||||| |||||||||| ||||||||||||| ||||| |||||||||| | |||||||||||| |||||||||||||||| |
|
|
| T |
290891 |
aaaccacatggaagatatatattgttaatgattgattggtaacatacatacatagtgattgattgctaactattcgatattaaggtgtctacatttctct |
290792 |
T |
|
| Q |
194 |
aattgttttgcatagacataatggtgtcatca-tttattggttatgaatttatgtatttttgtataaatattcatgatgagcaaccttgatcccacttaa |
292 |
Q |
| |
|
|||| |||| | || | |||| |||||||||| |||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
290791 |
aattatttttcttaaagataacggtgtcatcattttattggttataaatttatatatttttgtataaatattcatgatatgcaaccttgatcccacttaa |
290692 |
T |
|
| Q |
293 |
caaaatttctggattcgatgctgattatgtcgacagacacattgaaagggccatcacccagacccaattcctcaaacaagaccaatgtgtttacatcttt |
392 |
Q |
| |
|
| |||||| |||||||| |||| | ||||||||||||||||||||||||||| ||||| ||||||| || |||||||||||||| |||||||||||||| |
|
|
| T |
290691 |
cgaaatttttggattcgttgctaactatgtcgacagacacattgaaagggccttcacctagacccagctcttcaaacaagaccaacgtgtttacatcttt |
290592 |
T |
|
| Q |
393 |
attaaagaatggccttggcactgcgtaatacctaaaagatgaattttcaccaagccgataccttccaatacattgaccattaacctatgcttctcctct |
491 |
Q |
| |
|
||| |||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||| |||| |||||| |||||| |||||| |||||| |
|
|
| T |
290591 |
atttaagaatggccttggcactgcgtaaaacctaaaagatgaattttcaccaatccaataccttccgatactttgaccgttaacccatgcttttcctct |
290493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 354 - 413
Target Start/End: Complemental strand, 280266 - 280207
Alignment:
| Q |
354 |
acccaattcctcaaacaagaccaatgtgtttacatctttattaaagaatggccttggcac |
413 |
Q |
| |
|
||||| |||||||||||| ||||| ||||||||||| ||||| ||||||| ||||||||| |
|
|
| T |
280266 |
acccatttcctcaaacaaaaccaacgtgtttacatcattatttaagaatgaccttggcac |
280207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 450 - 489
Target Start/End: Complemental strand, 280089 - 280050
Alignment:
| Q |
450 |
ataccttccaatacattgaccattaacctatgcttctcct |
489 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
280089 |
ataccttccaatactttgaccattaacccatgcttctcct |
280050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 226 - 306
Target Start/End: Original strand, 6015796 - 6015876
Alignment:
| Q |
226 |
tttattggttatgaatttatgtatttttgtataaatattcatgatgagcaaccttgatcccacttaacaaaatttctggat |
306 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||||| ||||| | ||| |||| |||||||| |||||||||||| |
|
|
| T |
6015796 |
tttattggttataaatttatatatttttgtataaatatttatgataaacaattttgaccccacttattgaaatttctggat |
6015876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 226 - 306
Target Start/End: Original strand, 12252528 - 12252608
Alignment:
| Q |
226 |
tttattggttatgaatttatgtatttttgtataaatattcatgatgagcaaccttgatcccacttaacaaaatttctggat |
306 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||||| ||||| | ||| |||| |||||||| |||||||||||| |
|
|
| T |
12252528 |
tttattggttataaatttatatatttttgtataaatatttatgataaacaattttgaccccacttattgaaatttctggat |
12252608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University