View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11356_high_18 (Length: 432)
Name: NF11356_high_18
Description: NF11356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11356_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 19 - 417
Target Start/End: Complemental strand, 5617810 - 5617412
Alignment:
| Q |
19 |
catcaagcatggccttaacctccaaaaccgaatcctcactgaaacaaaccccttgaaaacgtgcatttctcattcgtttctcccacttgattttagactc |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
5617810 |
catcaagcatggccttaacctccaaaaccgaatcctcactgaaacaaaccccttgaaaacgtgcatttctcattcgtttctcccacttggttttagactc |
5617711 |
T |
|
| Q |
119 |
gactctctcaactctttgaatcccttcatatgctatcacattctcaaccttccaacaaatttcagcttcgtaccactgcctttgtttactccctcgtggt |
218 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
5617710 |
gactctctcgactctttgaatcccttcatatgctatcacattctcaaccttccaacaaatttcagcttcgcaccactgcctttgtttactccctcgtggt |
5617611 |
T |
|
| Q |
219 |
aaaaatgtgtccaccgtgtcaaacggtatccaaagataattaaacgcggattttagtctactaaccaaactacttgatgttaaatccgcatcttcatcca |
318 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5617610 |
aaaaatgtgtccaccgtgtcaaacggtatccaaaaataattaaacgcggattttagtctactaaccaaactacttgatgttaaatccgcatcttcatcca |
5617511 |
T |
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| Q |
319 |
ccaccacgacaattgttggatctaaactccgtactgcttctagaaacaacgagcgcaacgataagcaagagttcaaattcaaattcatatttgaatttg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
5617510 |
ccaccacgacaattgttggatctaaactccgtactgcttctagaaacaacgagcgcaacgatgagcaagagttcaaattcaaattcatatttgaatttg |
5617412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 19 - 417
Target Start/End: Complemental strand, 21163097 - 21162699
Alignment:
| Q |
19 |
catcaagcatggccttaacctccaaaaccgaatcctcactgaaacaaaccccttgaaaacgtgcatttctcattcgtttctcccacttgattttagactc |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
21163097 |
catcaagcatggccttaacctccaaaaccgaatcctcactgaaacaaaccccttgaaaacgtgcatttctcattcgtttctcccacttggttttagactc |
21162998 |
T |
|
| Q |
119 |
gactctctcaactctttgaatcccttcatatgctatcacattctcaaccttccaacaaatttcagcttcgtaccactgcctttgtttactccctcgtggt |
218 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
21162997 |
gactctctcgactctttgaatcccttcatatgctatcacattctcaaccttccaacaaatttcagcttcgcaccactgcctttgtttactccctcgtggt |
21162898 |
T |
|
| Q |
219 |
aaaaatgtgtccaccgtgtcaaacggtatccaaagataattaaacgcggattttagtctactaaccaaactacttgatgttaaatccgcatcttcatcca |
318 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21162897 |
aaaaatgtgtccaccgtgtcaaacggtatccaaaaataattaaacgcggattttagtctactaaccaaactacttgatgttaaatccgcatcttcatcca |
21162798 |
T |
|
| Q |
319 |
ccaccacgacaattgttggatctaaactccgtactgcttctagaaacaacgagcgcaacgataagcaagagttcaaattcaaattcatatttgaatttg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
21162797 |
ccaccacgacaattgttggatctaaactccgtactgcttctagaaacaacgagcgcaacgatgagcaagagttcaaattcaaattcatatttgaatttg |
21162699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 68 - 345
Target Start/End: Original strand, 39823656 - 39823933
Alignment:
| Q |
68 |
cccttgaaaacgtgcatttctcattcgtttctcccacttgattttagactcgactctctcaactctttgaatcccttcatatgctatcacattctcaacc |
167 |
Q |
| |
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|||||||||| ||||||||||||| || ||||| ||| || ||| || ||||||||||||||||||| ||||||| ||||||||||| |||| | |
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| T |
39823656 |
cccttgaaaattagcatttctcattctttgttcccatttgcttataggttcaactctctcaactctttgaacaccttcatgagctatcacattttcaatc |
39823755 |
T |
|
| Q |
168 |
ttccaacaaatttcagcttcgtaccactgcctttgtttactccctcgtggtaaaaatgtgtccaccgtgtcaaacggtatccaaagataattaaacgcgg |
267 |
Q |
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||||||||||| || ||||| ||||| |||||||| ||||| || || |||| |||||||||||| || ||| | |||||||| ||||||||||| |||| |
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| T |
39823756 |
ttccaacaaatatctgcttcataccattgcctttgcttacttccacgcggtagaaatgtgtccacggtatcataaggtatccatagataattaaatgcgg |
39823855 |
T |
|
| Q |
268 |
attttagtctactaaccaaactacttgatgttaaatccgcatcttcatccaccaccacgacaattgttggatctaaac |
345 |
Q |
| |
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| ||| |||||||||||| | |||| |||||||| |||||||||| || | | |||| |||||||||||||| |
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| T |
39823856 |
accttaatctactaaccaagttgtttgaagttaaatcaacatcttcatctactaaaataacaagtgttggatctaaac |
39823933 |
T |
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