View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11356_high_21 (Length: 407)
Name: NF11356_high_21
Description: NF11356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11356_high_21 |
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Alignment Details
Target: chr7 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 10 - 392
Target Start/End: Original strand, 44620478 - 44620861
Alignment:
| Q |
10 |
gcaaaggctaaggaaaagagaaggaggaaagtactgaggaatttcggtttccgagtgtgcgtgcgtg----gttgttgcgttggacattgaatccttagc |
105 |
Q |
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| T |
44620478 |
gcaaaggctaaggaaaagagaaggaggaaagtactgaggaatttcggtttccgagtgtgcgtgcgtgcgtggttgttgctttggacattgaatccttagc |
44620577 |
T |
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| Q |
106 |
cagcacgaattctacatttaccaaaacacccttcatgccactctttctctttgtatcttt-aagttggcaaagcttcctcaaccaagatcagatcattcg |
204 |
Q |
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| T |
44620578 |
cagcacgaattctacatttaccaaaacacccttcatgccactctttctctttgtatcttttaagttgccaaagcttcctcaaccaagatcagatcattcg |
44620677 |
T |
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| Q |
205 |
caatggagaaaactactttgttacgtgcatattttatttatttataatttgttagtattagtatctatctaataagcatttaatttattgaacccaacac |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
44620678 |
caatggagaaaactactttgttacgtgcatattttatttatttataatttgttagtattag----tatctaataagcatttaatttattgaacccaacac |
44620773 |
T |
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| Q |
305 |
ctctcagnnnnnnnttattgaacccaacatgttacataaatttttcaaatggggtctattaataactttactttgtatcgttatattt |
392 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
44620774 |
ctctcaaaaataaattattgaacccaacatgttacataaatttttcaaatggggtctattaataactttactttatatcgttatattt |
44620861 |
T |
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