View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11356_high_22 (Length: 400)
Name: NF11356_high_22
Description: NF11356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11356_high_22 |
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Alignment Details
Target: chr3 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 373
Target Start/End: Complemental strand, 24260717 - 24260343
Alignment:
| Q |
1 |
ttggttgcatgcagccaacatctctgcgttcttgaatttttagcattgataattgttggatcaggattgaattgtgcagaaaacatgctgattttgatat |
100 |
Q |
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| T |
24260717 |
ttggttgcatgcagccaacatctctgtgttcttgaatttttagcattgataattgttggatcaggattgaattgtgcagaaaacatgctgattttgatat |
24260618 |
T |
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| Q |
101 |
tttttaaaatctgaattgtctgatcttgatccaacatccgtcgatgtcctgaatacacaggactccgactacaggcaatcaaaatccaatgaactgctgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24260617 |
tttttaaaatctgaattgtctgatcttgatccaacatccgtcgatgtcctgaatacacaggactccgactacaggcaatcaaaatccaatgaactgctgc |
24260518 |
T |
|
| Q |
201 |
ccaaacaaaatttatcaacaatgtcagagattgaaattttagagtcatgatgactatggagagagcttacagctgtgttactatacttgtcaagataatg |
300 |
Q |
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|||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24260517 |
ccaaacaaaatttatcaacaatgtcagagatttaaatcttagagtcatgatgactatggagagagcttacagctgtgttactatacttgtcaagataatg |
24260418 |
T |
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| Q |
301 |
aaacctcccctgtttgatgtactataacctat--tatcactaatcattctgattcatcattggtgattatgaaca |
373 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
24260417 |
aaacctcccctgtttgatgtactataacctattatatcactaatcattctgattcatcattggtgattatgaaca |
24260343 |
T |
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