View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11356_high_25 (Length: 344)

Name: NF11356_high_25
Description: NF11356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11356_high_25
NF11356_high_25
[»] chr8 (3 HSPs)
chr8 (20-201)||(31788825-31789006)
chr8 (243-344)||(31789048-31789149)
chr8 (266-344)||(31784097-31784172)
[»] chr7 (2 HSPs)
chr7 (35-139)||(19137254-19137358)
chr7 (35-139)||(20736653-20736757)
[»] chr5 (1 HSPs)
chr5 (36-134)||(373160-373258)
[»] chr1 (2 HSPs)
chr1 (42-99)||(45332793-45332850)
chr1 (32-151)||(44275569-44275688)
[»] chr6 (1 HSPs)
chr6 (21-96)||(28874715-28874790)


Alignment Details
Target: chr8 (Bit Score: 166; Significance: 8e-89; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 20 - 201
Target Start/End: Original strand, 31788825 - 31789006
Alignment:
Q  20 ctggctaccagcaatttctcaattcatcacactctcagagaaggtaaccagagtgcggattttatggtaaaattaggagctgcttcagatgatgacattg 119  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  31788825 ctggctaccagcaatttctcaattcatcacattctcagagaaggtaaccagagtgcggattttatggcaaaattaggagctgcttcagatgatgacattg 31788924  T
Q  120 ttattcactcttctcctccaaccgacctccttggcctgctatggaacgacgccagggaacttatttccctagggcctagctt 201  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  31788925 ttattcactcttctcctccaaccgacctccttggcctgctaaggaacgacaccagggaacttatttccctagggcctagctt 31789006  T

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Target: chr8; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 243 - 344
Target Start/End: Original strand, 31789048 - 31789149
Alignment:
Q  243 attagctttgtaaccnnnnnnntaattatcaacattattttcctcctctttaaaaaatatttcaaacaagttgagaaatttttatcgttttctctaccct 342  Q
    |||||||||||||||       ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31789048 attagctttgtaaccaaaaaaataattataaacattactttcctcctctttaaaaaatatttcaaacaagttgagaaatttttatcgttttctctaccct 31789147  T
Q  343 ct 344  Q
    ||    
T  31789148 ct 31789149  T

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Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 266 - 344
Target Start/End: Original strand, 31784097 - 31784172
Alignment:
Q  266 aattatcaacattattttcctcctctttaaaaaatatttcaaacaagttgagaaatttttatcgttttctctaccctct 344  Q
    |||||| | ||||||||||||||||||||||   ||||||||||||||||||| |||||||||||||||||||||||||    
T  31784097 aattataagcattattttcctcctctttaaa---tatttcaaacaagttgagagatttttatcgttttctctaccctct 31784172  T

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Target: chr7 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 35 - 139
Target Start/End: Original strand, 19137254 - 19137358
Alignment:
Q  35 ttctcaattcatcacactctcagagaaggtaaccagagtgcggattttatggtaaaattaggagctgcttcagatgatgacattgttattcactcttctc 134  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||| ||||| |||||||| |||  ||||||| ||||||||||  |||    
T  19137254 ttctcaattcatcacactctcagagaatgtaaccagagtgtggattttatggcaaagttaggggctgcttctgatattgacattattattcactcccctc 19137353  T
Q  135 ctcca 139  Q
    |||||    
T  19137354 ctcca 19137358  T

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Target: chr7; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 35 - 139
Target Start/End: Original strand, 20736653 - 20736757
Alignment:
Q  35 ttctcaattcatcacactctcagagaaggtaaccagagtgcggattttatggtaaaattaggagctgcttcagatgatgacattgttattcactcttctc 134  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||| ||||| |||||||| |||  ||||||| ||||||||||  |||    
T  20736653 ttctcaattcatcacactctcagagaatgtaaccagagtgtggattttatggcaaagttaggggctgcttctgatattgacattattattcactcccctc 20736752  T
Q  135 ctcca 139  Q
    |||||    
T  20736753 ctcca 20736757  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 36 - 134
Target Start/End: Original strand, 373160 - 373258
Alignment:
Q  36 tctcaattcatcacactctcagagaaggtaaccagagtgcggattttatggtaaaattaggagctgcttcagatgatgacattgttattcactcttctc 134  Q
    ||||||||||  |||||||||||||||| || |||||||||||||  |||| ||| ||||  || |||||||||| ||||||  ||||||| |||||||    
T  373160 tctcaattcagtacactctcagagaaggcaatcagagtgcggattacatggcaaagttagaggcagcttcagatgttgacatcattattcattcttctc 373258  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 42 - 99
Target Start/End: Original strand, 45332793 - 45332850
Alignment:
Q  42 ttcatcacactctcagagaaggtaaccagagtgcggattttatggtaaaattaggagc 99  Q
    |||||||||||||||||||||| ||||| |||||||||||| | |  |||||||||||    
T  45332793 ttcatcacactctcagagaaggcaaccaaagtgcggattttttagcgaaattaggagc 45332850  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 32 - 151
Target Start/End: Original strand, 44275569 - 44275688
Alignment:
Q  32 aatttctcaattcatcacactctcagagaaggtaaccagagtgcggattttatggtaaaattaggagctgcttcagatgatgacattgttattcactctt 131  Q
    ||||||||  |||| || |||||||||||||  |||||  ||||||||||| |||  |||||||| || | |||||||| ||||||  |||||||  ||     
T  44275569 aatttctctcttcagcatactctcagagaagacaaccaatgtgcggattttttggccaaattaggggcggtttcagatgttgacatcattattcatccta 44275668  T
Q  132 ctcctccaaccgacctcctt 151  Q
    |||||||| | |||||||||    
T  44275669 ctcctccagcagacctcctt 44275688  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 21 - 96
Target Start/End: Original strand, 28874715 - 28874790
Alignment:
Q  21 tggctaccagcaatttctcaattcatcacactctcagagaaggtaaccagagtgcggattttatggtaaaattagg 96  Q
    |||||||||  |||||  |||||||||||||||||  ||||||||||||| |||  ||||| |||||||| |||||    
T  28874715 tggctaccaataattttacaattcatcacactctctaagaaggtaaccagtgtgttgatttcatggtaaagttagg 28874790  T

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