View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11356_high_31 (Length: 262)
Name: NF11356_high_31
Description: NF11356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11356_high_31 |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 42228777 - 42228526
Alignment:
| Q |
1 |
aatgaatgtttatgagaattggttgaaatttatctaaatcaacaagatacaacatactagtggtttaggacaaaagagatcgacaccccacgtttgataa |
100 |
Q |
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| T |
42228777 |
aatgaatgtttataagaattgattgaaatttatctaaatcaacaagatacaacatactagtggtttaggacaaaagagatcgacacgccacgtttgataa |
42228678 |
T |
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| Q |
101 |
aaatatgttactagaccaacaatagattaatgaagtgatatagtactagaaccgtttaagtacgtggacaagagtttgattcttgagtcatacgtataga |
200 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42228677 |
aaatatgttactagatcaacaatagattaatgaagtgatatagtactagaaccgtttaagtacgtggacaagagtttgattcttgagtcatacgtataga |
42228578 |
T |
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| Q |
201 |
aaaaatttggttggaag-agataatccatcttatgtgcgtcacaagtttctt |
251 |
Q |
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||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
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| T |
42228577 |
aaaaatttggttggaagaagatagtccatcttatgtgcgtcacaagtttctt |
42228526 |
T |
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