View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11356_high_33 (Length: 257)
Name: NF11356_high_33
Description: NF11356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11356_high_33 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 58 - 257
Target Start/End: Original strand, 25551507 - 25551706
Alignment:
| Q |
58 |
gtatatcagacgtaattggacttatcatacgcctccaattattttaataaaatcaaataacccttaatatttgatttgaaaagttttgttaacatatgtt |
157 |
Q |
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| T |
25551507 |
gtatatcaggcgtaattggacttatcatacgcctccaattattttaataaaatcaaataacccttaatatttgatttgaaaagttttgttaacatatgtt |
25551606 |
T |
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| Q |
158 |
ctagtgtactgagattcgtatttaactttgtttaaaatcagcgtagactaataaaataaaactcaattatttaaaagaacgtaccaattcaaatgcgcat |
257 |
Q |
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| T |
25551607 |
ctagtgtactgagattcgtatttaactttgtttaaaatcagcgtagactaataaaataaaactcaattatttaaaagaacgtaccaattcaaatgcgcat |
25551706 |
T |
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Target: chr5; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 60 - 253
Target Start/End: Original strand, 25550831 - 25551019
Alignment:
| Q |
60 |
atatcagacgtaattggacttatcatacgcctccaattattttaataaaatcaaataacccttaatatttgatttgaaaagttttgttaacatatgttct |
159 |
Q |
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||||||| ||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||| |
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| T |
25550831 |
atatcaggcgtaactggacttatcctacgcctccaactattttaataaaatcaaataacccttaatatttgatttgaaaa-----gttccaatattttcc |
25550925 |
T |
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| Q |
160 |
agtgtac--tgagattcgtatttaactttgtttaaaatcagcgtagactaataaaataaaactcaattatttaaaagaacgtaccaattcaaatgc |
253 |
Q |
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| T |
25550926 |
agtggactgtgagattcatatttaac--tgttttaaatcagtgtagactaataaaataaaactcaattatttaaaagaacataccaattcaaatgc |
25551019 |
T |
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