View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11356_high_37 (Length: 237)
Name: NF11356_high_37
Description: NF11356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11356_high_37 |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 10611590 - 10611813
Alignment:
| Q |
1 |
tggacacgtaaattagtggagtttagtctttgatgcagctcagataatattgtgtggcttgcagcaagttgagctttggtggagttgagttcctgcaaga |
100 |
Q |
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| T |
10611590 |
tggacaagtaaattagtggagtttagtctttgatgcagctcagataatattgtgtggcttgcagcaagttgagctttggtggagttgagttcctgcaaga |
10611689 |
T |
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| Q |
101 |
tggagtttgagtcactaggactcatagaagagtacttatacatgaaactaaatggaccagtgaacatgtaaatggtgacaaggttggtaaatatgattag |
200 |
Q |
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| T |
10611690 |
tggagtttgagtcactaggactcatagaagagtacttatacatgaaactaaatggaccagtgaacatgtaaatggtgacaaggttggtaaatatgattag |
10611789 |
T |
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| Q |
201 |
cataaaagatttcagcttgtgctt |
224 |
Q |
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|||| ||||||||||||||||||| |
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| T |
10611790 |
catagaagatttcagcttgtgctt |
10611813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 10615020 - 10615243
Alignment:
| Q |
1 |
tggacacgtaaattagtggagtttagtctttgatgcagctcagataatattgtgtggcttgcagcaagttgagctttggtggagttgagttcctgcaaga |
100 |
Q |
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|||||| |||| || |||||||| ||||||||||| ||||| ||||| || |||||||||||||| |||||||||||||||||||| ||||||||||| | |
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| T |
10615020 |
tggacaagtaagttggtggagttgagtctttgatgaagctccgataagatcgtgtggcttgcagcgagttgagctttggtggagttaagttcctgcaata |
10615119 |
T |
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| Q |
101 |
tggagtttgagtcactaggactcatagaagagtacttatacatgaaactaaatggaccagtgaacatgtaaatggtgacaaggttggtaaatatgattag |
200 |
Q |
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||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |
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| T |
10615120 |
tggagtttgagtcactactactcatagaggagtaccgatacatgaaactaaatggaccggtgaacatgtaaatggtgaaaaggttggtaaatatgattag |
10615219 |
T |
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| Q |
201 |
cataaaagatttcagcttgtgctt |
224 |
Q |
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||||| | | |||||||||||||| |
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| T |
10615220 |
cataacaaacttcagcttgtgctt |
10615243 |
T |
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