View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11356_high_38 (Length: 232)
Name: NF11356_high_38
Description: NF11356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11356_high_38 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 6 - 232
Target Start/End: Complemental strand, 25551963 - 25551737
Alignment:
| Q |
6 |
ttcatgtagcgttcgtgatccatctcacctttgacgatgaattgttctaggctacaacatgtaatcattcaatcggtgattcataaccattcataatttt |
105 |
Q |
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| T |
25551963 |
ttcatgtagtgttcgtgatccatctcacctttgacgatgaattgttctaggctacaacatgtaatcattcaatcggtgattcataaccattcataatttt |
25551864 |
T |
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| Q |
106 |
tcattacaaaggaaattttaatgtatattgtgattatgcgctatctatatttgtgattttccttcgatggtattagacctaactacgaaatcatgattta |
205 |
Q |
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| T |
25551863 |
tcattacaagggaaattttaatgtatattgtgattatgcgctatctatatttgtgattttccttcgatggtattagacctaactacgaaatcatgattta |
25551764 |
T |
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| Q |
206 |
gatttgtacgattacatgtttaatgtt |
232 |
Q |
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| T |
25551763 |
gatttgtacgattacatgtttaatgtt |
25551737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 232
Target Start/End: Complemental strand, 25551110 - 25551062
Alignment:
| Q |
184 |
ctaactacgaaatcatgatttagatttgtacgattacatgtttaatgtt |
232 |
Q |
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| T |
25551110 |
ctaactacaaaactatgatttagatttgtacgattacatatttaatgtt |
25551062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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