View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11356_high_4 (Length: 759)

Name: NF11356_high_4
Description: NF11356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11356_high_4
NF11356_high_4
[»] chr4 (1 HSPs)
chr4 (18-748)||(38146319-38147046)
[»] chr2 (4 HSPs)
chr2 (30-370)||(11786149-11786489)
chr2 (159-232)||(11934565-11934638)
chr2 (159-232)||(11947786-11947859)
chr2 (463-516)||(36161175-36161228)
[»] chr8 (4 HSPs)
chr8 (209-374)||(26028906-26029073)
chr8 (23-165)||(26039551-26039693)
chr8 (21-155)||(26029098-26029230)
chr8 (245-386)||(26039359-26039500)
[»] chr1 (2 HSPs)
chr1 (210-371)||(50898167-50898329)
chr1 (268-375)||(50904800-50904907)
[»] chr5 (1 HSPs)
chr5 (250-376)||(40587251-40587377)
[»] chr3 (1 HSPs)
chr3 (18-69)||(2197273-2197324)


Alignment Details
Target: chr4 (Bit Score: 629; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 629; E-Value: 0
Query Start/End: Original strand, 18 - 748
Target Start/End: Original strand, 38146319 - 38147046
Alignment:
Q  18 aaaatgagtgaattttcagaatctgatagcccttttccacatagaaatggaacattgtataaaattcagtacttgtctatatggcaagagggtgacaaga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38146319 aaaatgagtgaattttcagaatctgatagcccttttccacatagaaatggaacattgtataaaattcagtacttgtctatatggcaagagggtgacaaga 38146418  T
Q  118 atgttgcaaagcatgtagactggattaggaagctttataactatatgactccttatgtgtctaaatttccaagggaagcttatgtgaattatagggatct 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38146419 atgttgcaaagcatgtagactggattaggaagctttataactatatgactccttatgtgtctaaatttccaagggaagcttatgtgaattatagggatct 38146518  T
Q  218 tgatttgggaattaactctaagaatagtacaagctatatagaagcaactggttggggttataggtattttaagggtaattttaacaagttggttcagata 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38146519 tgatttgggaattaactctaagaatagtacaagctatatagaagcaactggttggggttataggtattttaagggtaattttaacaagttggttcagata 38146618  T
Q  318 aagactagagtggatcctgaaaatgtgtttaggcatgaacaaagtattccaccacttccaatataaaaataaaatgtcaaaacacaagaaaaggaaaata 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38146619 aagactagagtggatcctgaaaatgtgtttaggcatgaacaaagtattccaccacttccaatataaaaataaaatgtcaaaacacaagaaaaggaaaata 38146718  T
Q  418 agacactttgctgctagtatcagaagaatggtatttatgaatttgttatggaaggggtcattatctagtttagaaaaataaagatacatctaggtttgtt 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38146719 agacactttgctgctagtatcagaagaatggtatttatgaatttgttatggaaggggtcattatctagtttagaaaaataaagatacatctaggtttgtt 38146818  T
Q  518 acttttattgtattattaatgttgtaagatagtactgattaagtgcctaattgtaatgtgggatgtcttnnnnnnnnnnnnnnnnnnatttaggtgtcta 617  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                  |||||||||||||    
T  38146819 acttttattgtattattaatgttgtaagatagtactgattaagtgcctaattgtaatgtgggatgtctt--tgtgtgtgtgtgtgtgatttaggtgtcta 38146916  T
Q  618 attgcttcgaagtgtttgatggtcaagcaaaaagtgtagtgcaactagtggtannnnnnnnnnaaggatgtgggttttctaaatatgattctgatgtaaa 717  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||    
T  38146917 attgcttgtaagtgtttgatggtcaagcaaaaagtgtagtgcaactagtggta-tttttttttaaggatgtgggttttctaaatatgattctgatgtaaa 38147015  T
Q  718 agaattgtaactatactattatgaatttgat 748  Q
    |||||||||||||||||||||||||||||||    
T  38147016 agaattgtaactatactattatgaatttgat 38147046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 137; Significance: 4e-71; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 30 - 370
Target Start/End: Complemental strand, 11786489 - 11786149
Alignment:
Q  30 ttttcagaatctgatagcccttttccacatagaaatggaacattgtataaaattcagtacttgtctatatggcaagagggtgacaagaatgttgcaaagc 129  Q
    ||||| |||||||||| ||||||||| || |||||||||||| | || ||||||||||| ||  || | |||||||| || |||||||||| | ||||||    
T  11786489 ttttcggaatctgatatcccttttcctcacagaaatggaacactttacaaaattcagtatttaactctttggcaagatggagacaagaatgcttcaaagc 11786390  T
Q  130 atgtagactggattaggaagctttataactatatgactccttatgtgtctaaatttccaagggaagcttatgtgaattatagggatcttgatttgggaat 229  Q
    |||| || ||||| ||||||||||||||||| ||||| |||||||||||||| |||||||||||||| |||||||| ||||| |||||||||||||||||    
T  11786389 atgttgattggatcaggaagctttataactacatgaccccttatgtgtctaagtttccaagggaagcatatgtgaactatagagatcttgatttgggaat 11786290  T
Q  230 taactctaagaatagtacaagctatatagaagcaactggttggggttataggtattttaagggtaattttaacaagttggttcagataaagactagagtg 329  Q
     ||    |||||||||||||||| |||| ||||||||  ||||||| | | |||||| || | |||||| || | ||||||  | || ||||||| ||||    
T  11786289 gaataagaagaatagtacaagctttatacaagcaacttcttggggtaacatgtatttcaaagataatttcaataggttggtgaaaattaagactaaagtg 11786190  T
Q  330 gatcctgaaaatgtgtttaggcatgaacaaagtattccacc 370  Q
    ||||||||||||||||| |||||||| || |||||||||||    
T  11786189 gatcctgaaaatgtgttcaggcatgagcagagtattccacc 11786149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 232
Target Start/End: Original strand, 11934565 - 11934638
Alignment:
Q  159 tatatgactccttatgtgtctaaatttccaagggaagcttatgtgaattatagggatcttgatttgggaattaa 232  Q
    ||||||||||||| |||||| ||   |||||| || |||| | | ||||||| |||||||||||||||||||||    
T  11934565 tatatgactccttttgtgtccaagaatccaagagaggctttttttaattataaggatcttgatttgggaattaa 11934638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 232
Target Start/End: Original strand, 11947786 - 11947859
Alignment:
Q  159 tatatgactccttatgtgtctaaatttccaagggaagcttatgtgaattatagggatcttgatttgggaattaa 232  Q
    ||||||||||||| |||||| ||   |||||| || |||| | | ||||||| |||||||||||||||||||||    
T  11947786 tatatgactccttttgtgtccaagaatccaagagaggctttttttaattataaggatcttgatttgggaattaa 11947859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 463 - 516
Target Start/End: Complemental strand, 36161228 - 36161175
Alignment:
Q  463 ttatggaaggggtcattatctagtttagaaaaataaagatacatctaggtttgt 516  Q
    ||||| ||||||||||| ||||||||||||||||| ||||| || ||| |||||    
T  36161228 ttatgaaaggggtcattgtctagtttagaaaaatagagatatatttagatttgt 36161175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 109; Significance: 2e-54; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 209 - 374
Target Start/End: Complemental strand, 26029073 - 26028906
Alignment:
Q  209 tagggatcttgatttgggaattaactctaagaatagtacaagctatatagaagcaactggttggggttataggtattttaagggtaattttaacaagttg 308  Q
    |||||||||||||||||| |||| | | |||||||||||||||||||||||||||| || |||||| |||||||||||||| |||||||| |||||||||    
T  26029073 tagggatcttgatttggggattagccccaagaatagtacaagctatatagaagcaagtgtttggggatataggtattttaacggtaatttcaacaagttg 26028974  T
Q  309 gttcagataaagactagagtggatcctgaaaatgtgtttaggcatgaac--aaagtattccaccactt 374  Q
    ||| |||||||||||||||||||||||||||||||||| ||||||||||  | |||||||||||||||    
T  26028973 gttaagataaagactagagtggatcctgaaaatgtgttcaggcatgaacatatagtattccaccactt 26028906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 23 - 165
Target Start/End: Complemental strand, 26039693 - 26039551
Alignment:
Q  23 gagtgaattttcagaatctgatagcccttttccacatagaaatggaacattgtataaaattcagtacttgtctatatggcaagagggtgacaagaatgtt 122  Q
    |||| |||||||||||| |||||||| |||||  |||||||||| ||  ||||||||||||||||||||||||||||||||||| || |||||||||| |    
T  26039693 gagtcaattttcagaatatgatagccgttttcaccatagaaatgaaatgttgtataaaattcagtacttgtctatatggcaagatggagacaagaatgct 26039594  T
Q  123 gcaaagcatgtagactggattaggaagctttataactatatga 165  Q
    ||||| ||| |||| ||||||||||||||||||||||||||||    
T  26039593 gcaaatcatatagattggattaggaagctttataactatatga 26039551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 21 - 155
Target Start/End: Complemental strand, 26029230 - 26029098
Alignment:
Q  21 atgagtgaattttcagaatctgatagcccttttccacatagaaatggaacattgtataaaattcagtacttgtctatatggcaagagggtgacaagaatg 120  Q
    |||||| | ||||||||||||||||| |||||||| ||||||||||||||| |  |||||||||| ||||||||| |||||||||| |||||||||||||    
T  26029230 atgagtcagttttcagaatctgatagaccttttcctcatagaaatggaacact--ataaaattcaatacttgtctgtatggcaagatggtgacaagaatg 26029133  T
Q  121 ttgcaaagcatgtagactggattaggaagctttat 155  Q
     ||||| |||| |||| ||||| ||||||| ||||    
T  26029132 ctgcaaggcatatagattggatcaggaagcattat 26029098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 245 - 386
Target Start/End: Complemental strand, 26039500 - 26039359
Alignment:
Q  245 tacaagctatatagaagcaactggttggggttataggtattttaagggtaattttaacaagttggttcagataaagactagagtggatcctgaaaatgtg 344  Q
    ||||||||| | |||||||| || ||| || |||||||||||||||| |||||| || | ||| ||| || ||||||||||||||||||||||||||| |    
T  26039500 tacaagctacacagaagcaagtgtttgaggatataggtattttaaggataatttcaaaaggttagttaaggtaaagactagagtggatcctgaaaatgag 26039401  T
Q  345 tttaggcatgaacaaagtattccaccacttccaatataaaaa 386  Q
    || ||||||||||| ||| ||  | |||||||||||| ||||    
T  26039400 ttcaggcatgaacagagtgttaaatcacttccaatatgaaaa 26039359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 87; Significance: 3e-41; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 210 - 371
Target Start/End: Original strand, 50898167 - 50898329
Alignment:
Q  210 agggatcttgatttgggaattaactctaagaatagtacaagctatatagaagcaactggttggggttataggtattttaag-ggtaattttaacaagttg 308  Q
    |||||| ||||||||| |||||| ||||| || ||||||||||| |||||||||| || |||||||||||||||||||||| | |||||| |||||||||    
T  50898167 agggatattgatttggcaattaaatctaataacagtacaagctacatagaagcaagtgcttggggttataggtattttaagtgttaatttcaacaagttg 50898266  T
Q  309 gttcagataaagactagagtggatcctgaaaatgtgtttaggcatgaacaaagtattccacca 371  Q
    ||| ||||||| |||| | ||||||||||| ||||||| |||||||||| |||||||||||||    
T  50898267 gttaagataaaaactataatggatcctgaatatgtgttaaggcatgaaccaagtattccacca 50898329  T

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Target: chr1; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 268 - 375
Target Start/End: Original strand, 50904800 - 50904907
Alignment:
Q  268 gttggggttataggtattttaagggtaattttaacaagttggttcagataaagactagagtggatcctgaaaatgtgtttaggcatgaacaaagtattcc 367  Q
    ||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||| || |||||||| ||||||| |||| |||||||||||||||    
T  50904800 gttggggttataggtattttaagagtaatttcaacaagttggttaagataaagactagaatgaatcctgaatatgtgttcaggcgtgaacaaagtattcc 50904899  T
Q  368 accacttc 375  Q
    ||||||||    
T  50904900 accacttc 50904907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 9e-32; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 250 - 376
Target Start/End: Complemental strand, 40587377 - 40587251
Alignment:
Q  250 gctatatagaagcaactggttggggttataggtattttaagggtaattttaacaagttggttcagataaagactagagtggatcctgaaaatgtgtttag 349  Q
    ||||||| ||||||  || |||||| |||||||||||||||| |||||| ||||||||| || |||||||| ||||||||||||||||||||||||| ||    
T  40587377 gctatattgaagcatgtgcttggggatataggtattttaaggataatttcaacaagttgattaagataaagtctagagtggatcctgaaaatgtgttcag 40587278  T
Q  350 gcatgaacaaagtattccaccacttcc 376  Q
    ||| ||| | |||||||||||||||||    
T  40587277 gcaggaatagagtattccaccacttcc 40587251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 2197273 - 2197324
Alignment:
Q  18 aaaatgagtgaattttcagaatctgatagcccttttccacatagaaatggaa 69  Q
    |||||||||||| ||||||||||||| | |||||||||||| ||||| ||||    
T  2197273 aaaatgagtgaaatttcagaatctgaaatcccttttccacacagaaaaggaa 2197324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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