View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11356_high_43 (Length: 222)
Name: NF11356_high_43
Description: NF11356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11356_high_43 |
 | |
|
| [»] scaffold0425 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 12)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 12 - 204
Target Start/End: Complemental strand, 6246139 - 6245947
Alignment:
| Q |
12 |
tggacatcattgctagtgacgctgcaaaacaaaagggaaagatacaacgctttctttcaggttctatcaatcgatttgaatctaggattaaagtattgct |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6246139 |
tggacatcattgctagtgacgctgcaaaacaaaagggaaagatacaacgctttctttcaggttctatcaatcgatttgaatctaggattaaagtattgct |
6246040 |
T |
|
| Q |
112 |
caagaggctagagtttcttgcagatcaaaagaatatattgggacttcacgaattaagtcgttattattatgaagatggagccagcagattttc |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6246039 |
caagaggctagagtttcttgcagatcaaaagaatatattgggacttcacgaattaagtcgttattattatgaagatggagccagcagattttc |
6245947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 18 - 196
Target Start/End: Complemental strand, 6238502 - 6238330
Alignment:
| Q |
18 |
tcattgctagtgacgctgcaaaacaaaagggaaagatacaacgctttctttcaggttctatcaatcgatttgaatctaggattaaagtattgctcaagag |
117 |
Q |
| |
|
||||||||| ||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6238502 |
tcattgctactgatgctgcacaacaaaagggaaagatacaacgctatctttcaggttctatcaatcgatttgaatctaggattaaagtattgctcaagag |
6238403 |
T |
|
| Q |
118 |
gctagagtttcttgcagatcaaaagaatatattgggacttcacgaattaagtcgttattattatgaagatggagccagc |
196 |
Q |
| |
|
| |||||||||||||| |||||||| ||| |||| |||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
6238402 |
gttagagtttcttgcaaatcaaaaggatagattgcaacttca------tagttcttattattatgaagatggagccagc |
6238330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 18 - 133
Target Start/End: Complemental strand, 6259997 - 6259882
Alignment:
| Q |
18 |
tcattgctagtgacgctgcaaaacaaaagggaaagatacaacgctttctttcaggttctatcaatcgatttgaatctaggattaaagtattgctcaagag |
117 |
Q |
| |
|
||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
6259997 |
tcattgctactgacgccgcacaacaaaagggaaagatacaacgctttctttcaggttctatcaatcgatttgaatctaggattaaagtattgcttaagag |
6259898 |
T |
|
| Q |
118 |
gctagagtttcttgca |
133 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
6259897 |
gctagagtttcttgca |
6259882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 12 - 120
Target Start/End: Complemental strand, 6266522 - 6266414
Alignment:
| Q |
12 |
tggacatcattgctagtgacgctgcaaaacaaaagggaaagatacaacgctttctttcaggttctatcaatcgatttgaatctaggattaaagtattgct |
111 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
6266522 |
tggacatcattgctagtgactctgcaaatcaaaagggaaagatacaacgctttctttcaggttctatcaatcggtttgaatctaggattaaagtattgct |
6266423 |
T |
|
| Q |
112 |
caagaggct |
120 |
Q |
| |
|
||||||||| |
|
|
| T |
6266422 |
caagaggct |
6266414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 18 - 133
Target Start/End: Complemental strand, 6169734 - 6169619
Alignment:
| Q |
18 |
tcattgctagtgacgctgcaaaacaaaagggaaagatacaacgctttctttcaggttctatcaatcgatttgaatctaggattaaagtattgctcaagag |
117 |
Q |
| |
|
||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
6169734 |
tcattgctactgacgccgcacaacaaaagggaaagatacaacgctttctttcaggttctatcaatcgatttgaatctaggattaaagtattgatcaagag |
6169635 |
T |
|
| Q |
118 |
gctagagtttcttgca |
133 |
Q |
| |
|
|||| || |||||||| |
|
|
| T |
6169634 |
gctaaaggttcttgca |
6169619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 43 - 142
Target Start/End: Complemental strand, 6143122 - 6143023
Alignment:
| Q |
43 |
aaagggaaagatacaacgctttctttcaggttctatcaatcgatttgaatctaggattaaagtattgctcaagaggctagagtttcttgcagatcaaaag |
142 |
Q |
| |
|
|||||| |||||| |||||||||||| | || ||| ||||||||||||||||| ||||||||| |||| |||||||||||||| | ||||| ||||||| |
|
|
| T |
6143122 |
aaaggggaagataagacgctttctttctgcttttattaatcgatttgaatctagaattaaagtaatgctgaagaggctagagttccgtgcaggtcaaaag |
6143023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 43 - 157
Target Start/End: Original strand, 6590576 - 6590693
Alignment:
| Q |
43 |
aaagggaaagatacaacgctttctttcaggttctatcaatcga---tttgaatctaggattaaagtattgctcaagaggctagagtttcttgcagatcaa |
139 |
Q |
| |
|
|||||| ||||||| ||||||||||||| ||| ||| |||||| |||||| |||||||||||| |||| | ||| ||||||||||||||||||||| |
|
|
| T |
6590576 |
aaagggcaagatacgacgctttctttcacgttttattaatcgaggatttgaagctaggattaaagcattgatacagaacctagagtttcttgcagatcaa |
6590675 |
T |
|
| Q |
140 |
aagaatatattgggactt |
157 |
Q |
| |
|
||| ||| |||||||||| |
|
|
| T |
6590676 |
aaggataaattgggactt |
6590693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 85 - 140
Target Start/End: Complemental strand, 6900873 - 6900818
Alignment:
| Q |
85 |
atttgaatctaggattaaagtattgctcaagaggctagagtttcttgcagatcaaa |
140 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||| |
|
|
| T |
6900873 |
atttgaatctaggattaaagtattgctgaagaggctaaagtttattgcagatcaaa |
6900818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 83 - 159
Target Start/End: Original strand, 6850046 - 6850122
Alignment:
| Q |
83 |
cgatttgaatctaggattaaagtattgctcaagaggctagagtttcttgcagatcaaaagaatatattgggacttca |
159 |
Q |
| |
|
||||| |||||||||| |||||||||||| | |||| ||||||| ||||||| | ||| | |||||||||||||||| |
|
|
| T |
6850046 |
cgattggaatctaggagtaaagtattgctgaggaggttagagttccttgcagctgaaagggatatattgggacttca |
6850122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 142
Target Start/End: Original strand, 13269837 - 13269917
Alignment:
| Q |
62 |
tttctttcaggttctatcaatcgatttgaatctaggattaaagtattgctcaagaggctagagtttcttgcagatcaaaag |
142 |
Q |
| |
|
|||||||| | || ||| ||||||||||||||||| ||||||| | ||| ||||||||| |||||||||||||| |||| |
|
|
| T |
13269837 |
tttctttctgcttttattaatcgatttgaatctagaattaaagcttcgctggagaggctagtgtttcttgcagatctaaag |
13269917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 147
Target Start/End: Complemental strand, 5250940 - 5250873
Alignment:
| Q |
80 |
aatcgatttgaatctaggattaaagtattgctcaagaggctagagtttcttgcagatcaaaagaatat |
147 |
Q |
| |
|
|||| |||||||||||||||||||| |||||| ||| |||||| ||||||||| | |||||| |||| |
|
|
| T |
5250940 |
aatccatttgaatctaggattaaagaattgctagagaagctagaatttcttgcaaagcaaaaggatat |
5250873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 43 - 104
Target Start/End: Original strand, 8568172 - 8568233
Alignment:
| Q |
43 |
aaagggaaagatacaacgctttctttcaggttctatcaatcgatttgaatctaggattaaag |
104 |
Q |
| |
|
||||||||||| |||| ||| |||||||||| || |||||||||||||||||||| |||| |
|
|
| T |
8568172 |
aaagggaaagacgcaacacttcctttcaggttttactaatcgatttgaatctaggatcaaag |
8568233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 83 - 159
Target Start/End: Original strand, 13154 - 13230
Alignment:
| Q |
83 |
cgatttgaatctaggattaaagtattgctcaagaggctagagtttcttgcagatcaaaagaatatattgggacttca |
159 |
Q |
| |
|
||||| |||||||||| |||||||||||| | |||| ||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
13154 |
cgattggaatctaggagtaaagtattgctgaggaggttagagttccttgcagatcaaaaggatatattgggacttca |
13230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University