View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11356_high_44 (Length: 221)
Name: NF11356_high_44
Description: NF11356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11356_high_44 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 173; Significance: 3e-93; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 19 - 206
Target Start/End: Complemental strand, 53434468 - 53434278
Alignment:
| Q |
19 |
atatgatattcaattagctagtactattgtgaaatgtgattaactaattttattgatgatatgtgaatg---ggtttaggaatgaaaaagctctagtaca |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
53434468 |
atatgatattcaattagctagtactattgtgaaatgtgattaactaattttattgatgatatgtgaatgaatggtttaggaatgaaaaagctctagtaca |
53434369 |
T |
|
| Q |
116 |
caactataaatacggattctcaggcttcgcagcccgcttatcaaaaaatgaagcaaatttagttgctcaacaacctggagttgtgtctgtg |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53434368 |
caactataaatacggattctcaggcttcgcagcccgcttatcaaaaaatgaagtaaatttagttgctcaacaacctggagttgtgtctgtg |
53434278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 79 - 206
Target Start/End: Complemental strand, 26099344 - 26099218
Alignment:
| Q |
79 |
atgtgaatgggtttaggaatgaaaaagctctagtacacaactataaatacggattctcaggcttcgcagcccgcttatcaaaaaatgaagcaaatttagt |
178 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||| | | |
|
|
| T |
26099344 |
atgtgaatgg-tttaggaatgaaaaagctctagtacacaactacaaatacggattctcaggcttcgcagctcgtttatcaaaaaatgaagcaaattcaat |
26099246 |
T |
|
| Q |
179 |
tgctcaacaacctggagttgtgtctgtg |
206 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
26099245 |
tgctcaacaacctggagttgtgtctgtg |
26099218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 89 - 206
Target Start/End: Original strand, 48370842 - 48370959
Alignment:
| Q |
89 |
gtttaggaatgaaaaagctctagtacacaactataaatacggattctcaggcttcgcagcccgcttatcaaaaaatgaagcaaatttagttgctcaacaa |
188 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| || ||||| |||||||||||| | | ||||||||||| |
|
|
| T |
48370842 |
gtttaggaatgaaaaagctctagtacataactataagcacggattctcaggcttcgcagctcgtttatcgaaaaatgaagcagcctcaattgctcaacaa |
48370941 |
T |
|
| Q |
189 |
cctggagttgtgtctgtg |
206 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
48370942 |
cctggagttgtgtctgtg |
48370959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 90 - 205
Target Start/End: Complemental strand, 53426233 - 53426118
Alignment:
| Q |
90 |
tttaggaatgaaaaagctctagtacacaactataaatacggattctcaggcttcgcagcccgcttatcaaaaaatgaagcaaatttagttgctcaacaac |
189 |
Q |
| |
|
||||||||||| |||||||||||||| ||||| ||| |||||||||||||||| || || || |||||||||| ||||||||| | | |||||||||||| |
|
|
| T |
53426233 |
tttaggaatgagaaagctctagtacataactacaaacacggattctcaggctttgcggctcgtttatcaaaaagtgaagcaaactcaattgctcaacaac |
53426134 |
T |
|
| Q |
190 |
ctggagttgtgtctgt |
205 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
53426133 |
ctggagttgtgtctgt |
53426118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 112 - 202
Target Start/End: Complemental strand, 53321909 - 53321819
Alignment:
| Q |
112 |
tacacaactataaatacggattctcaggcttcgcagcccgcttatcaaaaaatgaagcaaatttagttgctcaacaacctggagttgtgtc |
202 |
Q |
| |
|
|||||||||| ||| | ||||||||||| || ||||| | |||||||| |||||||||| | | | ||||||||||||||||||||||| |
|
|
| T |
53321909 |
tacacaactacaaacatggattctcaggttttgcagctcttctatcaaaacatgaagcaaactcaatagctcaacaacctggagttgtgtc |
53321819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University